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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Amyloid neuropathy Amyloidosis
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), PSEN1(2), TTR(6)
0.150 1.000 1.59e-9 1.42e-8 ✓ sig. —
Hemangiosarcoma Thyroid neoplasms
5 genes
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TP53(1), CTNNB1(1), KRAS(1), HRAS(1), CCND1(1)
0.083 0.278 1.58e-9 1.41e-8 ✓ sig. —
Cutis laxa Thoracic aortic aneurysm and aortic dissection
5 genes
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3 of 5 corroborated by 2+ sources
COL5A1(1), ELN(8), EFEMP2(7), LOX(5), SRFBP1(1)
0.088 0.250 1.57e-9 1.39e-8 ✓ sig. —
Gastric ulcer Sepsis
6 genes
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6 of 6 corroborated by 2+ sources
NOS3(2), IL1B(2), TNF(2), MMP9(2), NOS2(2), ADM(2)
0.073 0.176 1.55e-9 1.38e-8 ✓ sig. —
Congenital pes cavus Dysarthria
4 genes
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HARS1(1), SMC1A(1), BIVM-ERCC5(1), ERCC5(1)
0.129 0.333 1.53e-9 1.37e-8 ✓ sig. —
Hyperuricemia Nephrolithiasis
9 genes
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2 of 9 corroborated by 2+ sources
VEGFA(1), WDR72(1), UMOD(1), GCKR(1), ABCG2(5), SLC17A3(4), BCAS1(1), SPATA31H1(1), TMEM171(1)
0.051 0.141 1.50e-9 1.34e-8 ✓ sig. Cluster 178 →
Hypogonadism Panhypopituitarism
7 genes
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5 of 7 corroborated by 2+ sources
IL17RD(1), TACR3(3), TAC3(2), GNRH1(2), KISS1R(1), PROP1(2), GNRHR(2)
0.062 0.163 1.50e-9 1.34e-8 ✓ sig. Cluster 54 →
Hypogonadism Pituitary dwarfism
7 genes
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4 of 7 corroborated by 2+ sources
IL17RD(1), TACR3(3), TAC3(2), GNRH1(2), KISS1R(1), PROP1(1), GNRHR(2)
0.062 0.163 1.50e-9 1.34e-8 ✓ sig. Cluster 54 →
Head and neck neoplasms Uterine neoplasms
6 genes
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EGFR(1), RARB(1), VEGFA(1), CSF3(1), BAP1(1), APOBEC3B(1)
0.075 0.158 1.49e-9 1.33e-8 ✓ sig. —
Intrahepatic cholestasis of pregnancy Progressive intrahepatic cholestasis
4 genes
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3 of 4 corroborated by 2+ sources
NR1H4(1), ATP8B1(5), ABCB11(4), ABCB4(6)
0.133 0.308 1.47e-9 1.31e-8 ✓ sig. Cluster 319 →
Immunodeficiency Vitiligo
12 genes
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12 of 12 corroborated by 2+ sources
PIK3R1(5), IFIH1(6), RHOH(2), TNF(4), IRF4(3), IFNG(4), BACH2(6), IL2RA(2), FASLG(2), PTPRC(5), IL21R(5), ITPR3(2)
0.047 0.095 1.47e-9 1.31e-8 ✓ sig. —
Melas syndrome Myoclonic epilepsy with ragged red fibers
3 genes
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3 of 3 corroborated by 2+ sources
IL1A(2), IL1B(2), ND5(2)
0.158 1.000 1.34e-9 1.20e-8 ✓ sig. Cluster 32 →
Cap myopathy Nemaline myopathy
3 genes
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3 of 3 corroborated by 2+ sources
MYPN(3), TPM2(4), TPM3(4)
0.158 1.000 1.34e-9 1.20e-8 ✓ sig. —
Bouillaud’s disease Henoch schoenlein purpura
3 genes
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3 of 3 corroborated by 2+ sources
0.158 1.000 1.34e-9 1.20e-8 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Henoch schoenlein purpura
3 genes
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3 of 3 corroborated by 2+ sources
0.158 1.000 1.34e-9 1.20e-8 ✓ sig. Cluster 1 →
Bouillaud’s disease Chorea
3 genes
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0.158 1.000 1.34e-9 1.20e-8 ✓ sig. Cluster 1 →
Delirium, dementia, and cognitive disorders Movement disorder
7 genes
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5 of 7 corroborated by 2+ sources
CRH(2), DRD2(2), DRD3(2), MT1A(1), CNR1(2), FOSB(2), MT2A(1)
0.065 0.125 1.31e-9 1.18e-8 ✓ sig. —
Diabetic angiopathies Sickle cell anemia
5 genes
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4 of 5 corroborated by 2+ sources
GCH1(1), NOS3(2), MTHFR(2), TNF(2), HP(2)
0.096 0.179 1.30e-9 1.17e-8 ✓ sig. —
Diabetic peripheral angiopathy Sickle cell anemia
5 genes
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2 of 5 corroborated by 2+ sources
GCH1(1), NOS3(1), MTHFR(1), TNF(2), HP(2)
0.096 0.179 1.30e-9 1.17e-8 ✓ sig. —
Autoimmune hepatitis Urticaria
6 genes
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5 of 6 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(2), HLA-DQB1(3), TGFB1(2), HLA-DPB1(2), IL18(2)
0.076 0.158 1.30e-9 1.17e-8 ✓ sig. Cluster 16 →
Cholangiocarcinoma Thyroid neoplasms
6 genes
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HNF1B(1), TP53(1), IL6(1), PTGS2(1), KRAS(1), SLC5A5(1)
0.076 0.158 1.30e-9 1.17e-8 ✓ sig. Cluster 5 →
Cardiomegaly Pulmonary hypertension
8 genes
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1 of 8 corroborated by 2+ sources
NOS3(1), SOD2(1), TNF(1), CAV1(5), HIF1A(1), NPPB(1), EDN1(1), HTR2B(1)
0.058 0.131 1.30e-9 1.17e-8 ✓ sig. —
Mouth neoplasms Oral cavity carcinoma
6 genes
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4 of 6 corroborated by 2+ sources
LAMC3(2), HLA-B(1), ADH1B(2), CLPTM1L(2), PDE2A(1), GPN1(2)
0.070 0.214 1.29e-9 1.16e-8 ✓ sig. —
Contact dermatitis Obstructive airway disease
9 genes
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9 of 9 corroborated by 2+ sources
GSTP1(2), HMOX1(2), TLR4(2), CRHR1(2), CYP1A1(2), CD86(2), DEFB1(2), NQO1(2), SOD3(2)
0.054 0.120 1.26e-9 1.13e-8 ✓ sig. —
Central nervous system non-hodgkin lymphoma Nasal polyp
4 genes
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HLA-DQA1(1), HLA-DRB1(1), IRF4(1), BACH2(1)
0.093 0.571 1.22e-9 1.10e-8 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.