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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Amnesia Hypotension
7 genes
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7 of 7 corroborated by 2+ sources
IL1A(2), IL2(2), AVP(2), IL6(2), PDYN(2), POMC(2), TAC1(2)
0.089 0.389 6.55e-13 8.02e-12 ✓ sig. Cluster 13 →
Myasthenic syndrome Pena-shokeir syndrome
8 genes
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7 of 8 corroborated by 2+ sources
SCN4A(3), RAPSN(3), RYR1(1), CHRNG(2), CHRND(3), MUSK(3), SLC18A3(3), DOK7(2)
0.094 0.200 6.82e-13 8.34e-12 ✓ sig. —
Atopic dermatitis Contact dermatitis
10 genes
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10 of 10 corroborated by 2+ sources
GSTP1(2), TLR4(2), AHR(3), CYP1A1(2), CXCR3(2), IL18(2), FLG(4), GLB1(2), CLDN1(2), S100A8(2)
0.076 0.152 6.85e-13 8.37e-12 ✓ sig. Cluster 16 →
Androgenetic alopecia Prostate cancer
66 genes
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12 of 66 corroborated by 2+ sources
KANSL1(1), RREB1(1), SRD5A2(2), CCDC91(1), CDKAL1(1), EBF1(1), FMN1(1), GLI2(1), ILRUN(1), L3MBTL3(1), LINC02210-CRHR1(1), NSF(1) +54 more
0.051 0.162 6.88e-13 8.40e-12 ✓ sig. Cluster 20 →
Ductal carcinoma Intraductal noninfiltrating carcinoma
4 genes
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CA9(1), HIF1A(1), STAT5A(1), SLC2A1(1)
0.308 0.800 7.04e-13 8.60e-12 ✓ sig. Cluster 124 →
Fatty liver, alcoholic Hepatomegaly
10 genes
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10 of 10 corroborated by 2+ sources
LDLR(2), LEP(2), NFE2L2(2), PPARA(2), AKT1(2), CYP1B1(2), MET(2), NR1H4(2), NR1I2(2), LEPR(2)
0.074 0.172 7.23e-13 8.82e-12 ✓ sig. —
Deficiency anemia Vitamin deficiency disorder
5 genes
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FUT2(1), TCN2(1), CUBN(1), TCN1(1), OOSP3(1)
0.172 0.556 7.40e-13 9.02e-12 ✓ sig. Cluster 106 →
Lymphatic malformation Non-immune hydrops fetalis
6 genes
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6 of 6 corroborated by 2+ sources
EPHB4(4), PIEZO1(5), THSD1(4), ANGPT2(4), CALCRL(4), FLT4(5)
0.113 0.462 7.44e-13 9.07e-12 ✓ sig. —
Gonadal dysgenesis Xx gonadal dysgenesis syndrome
5 genes
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1 of 5 corroborated by 2+ sources
LARS2(1), TWNK(1), HSD17B4(2), ERAL1(1), HARS2(1)
0.156 0.625 7.61e-13 9.26e-12 ✓ sig. —
Ichthyosis Xeroderma
4 genes
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GJB2(1), PNPLA1(1), KRT2(1), SUPV3L1(1)
0.235 1.000 7.77e-13 9.46e-12 ✓ sig. —
Bartter syndrome Gitelman syndrome
4 genes
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3 of 4 corroborated by 2+ sources
CLCNKB(6), SLC12A1(7), CASR(1), SLC12A3(5)
0.333 0.667 8.07e-13 9.81e-12 ✓ sig. —
Bone fragility with contractures, arterial rupture, and deafness Osteoporosis
11 genes
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11 of 11 corroborated by 2+ sources
GORAB(2), SERPINF1(2), COL1A1(3), COL1A2(3), WNT1(5), LRP5(4), COPB2(5), IFITM5(2), P4HB(2), PLS3(2), SP7(2)
0.059 0.224 8.14e-13 9.89e-12 ✓ sig. Cluster 68 →
Osteoporosis Osteoporosis-pseudoglioma syndrome
11 genes
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11 of 11 corroborated by 2+ sources
GORAB(2), SERPINF1(2), COL1A1(3), COL1A2(3), WNT1(5), LRP5(6), COPB2(5), IFITM5(2), P4HB(2), PLS3(2), SP7(2)
0.059 0.224 8.14e-13 9.89e-12 ✓ sig. Cluster 68 →
Fanconi anemia Hereditary breast and ovarian cancer syndrome
6 genes
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6 of 6 corroborated by 2+ sources
RAD51(5), PALB2(7), BRCA2(8), BRIP1(7), BRCA1(7), RAD51C(7)
0.122 0.400 8.68e-13 1.05e-11 ✓ sig. Cluster 132 →
Congenital heart defects Lung disease
11 genes
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7 of 11 corroborated by 2+ sources
IRX1(2), VEGFA(2), GSTP1(1), GSTT1(1), GSTM1(1), HIF1A(2), IRX5(2), MEFV(1), STRA6(2), EDNRA(2), AFF4(2)
0.068 0.157 8.69e-13 1.06e-11 ✓ sig. —
Thyroid cancer Toxic nodular goiter
6 genes
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1 of 6 corroborated by 2+ sources
TERT(1), NRG1(1), TG(2), SLK(1), STN1(1), MBIP(1)
0.130 0.353 8.85e-13 1.07e-11 ✓ sig. —
Hyperlipoproteinemia Lipoprotein lipase deficiency
7 genes
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7 of 7 corroborated by 2+ sources
APOB(3), APOE(6), LDLR(3), LPL(7), CETP(2), PCSK9(2), APOA5(6)
0.109 0.233 8.94e-13 1.08e-11 ✓ sig. —
Anophthalmia/microphthalmia-esophageal atresia syndrome Anterior segment dysgenesis
6 genes
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4 of 6 corroborated by 2+ sources
PITX3(4), BMP4(2), ELP4(1), PAX6(3), PITX2(4), PTCH1(1)
0.140 0.261 9.49e-13 1.15e-11 ✓ sig. —
Allergic contact dermatitis Hypersensitivity
10 genes
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10 of 10 corroborated by 2+ sources
SPP1(2), IL10(2), IL4(2), TNF(2), IFNG(2), CYP1A1(2), CCR2(2), IL18(2), CCR1(2), CCL19(2)
0.075 0.143 9.57e-13 1.16e-11 ✓ sig. Cluster 16 →
Macrothrombocytopenia Platelet-type bleeding disorder
5 genes
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5 of 5 corroborated by 2+ sources
ITGB3(6), ITGA2B(6), TPM4(5), ACTN1(6), GFI1B(6)
0.185 0.455 9.89e-13 1.20e-11 ✓ sig. Cluster 33 →
Male infertility round headed spermatozoa Spermatogenic failure
6 genes
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5 of 6 corroborated by 2+ sources
SPATA16(4), SEPTIN4(2), DPY19L2(5), ZPBP(3), GGN(3), C2CD6(1)
0.052 0.857 1.00e-12 1.21e-11 ✓ sig. —
Global developmental delay syndromic intellectual disability
13 genes
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13 of 13 corroborated by 2+ sources
BPTF(2), AUTS2(2), CDK13(2), CRADD(2), KMT2C(2), RAC1(2), NSD2(2), KAT6A(2), ASXL3(2), CHD4(2), MED13L(2), NAA15(2) +1 more
0.033 0.361 1.01e-12 1.22e-11 ✓ sig. —
Capillary malformation-arteriovenous malformation Klippel-trenaunay syndrome
4 genes
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2 of 4 corroborated by 2+ sources
GNAQ(3), RASA1(6), PIK3CA(1), CCNH(1)
0.333 0.571 1.05e-12 1.26e-11 ✓ sig. Cluster 40 →
Hereditary corneal dystrophy Polymorphous corneal dystrophy
4 genes
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COL8A2(1), OVOL2(1), VSX1(1), ZEB1(1)
0.286 0.800 1.06e-12 1.27e-11 ✓ sig. Cluster 75 →
Hereditary corneal dystrophy Posterior polymorphous corneal dystrophy
4 genes
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4 of 4 corroborated by 2+ sources
COL8A2(4), OVOL2(4), VSX1(4), ZEB1(4)
0.286 0.800 1.06e-12 1.27e-11 ✓ sig. Cluster 75 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.