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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Azoospermia Testicular azoospermia
7 genes
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REC8(1), C14orf39(1), MSH5(1), DMC1(1), GCNA(1), MOV10L1(1), TERB1(1)
0.119 0.219 3.41e-13 4.30e-12 ✓ sig. Cluster 31 →
Brain ischemia Diabetic angiopathies
8 genes
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8 of 8 corroborated by 2+ sources
CASP3(2), MTHFR(2), SOD2(2), TNF(2), PLAT(2), RELA(2), ALB(2), IL1RN(2)
0.088 0.286 3.49e-13 4.40e-12 ✓ sig. —
Brain ischemia Diabetic peripheral angiopathy
8 genes
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8 of 8 corroborated by 2+ sources
CASP3(2), MTHFR(2), SOD2(2), TNF(2), PLAT(2), RELA(2), ALB(2), IL1RN(2)
0.088 0.286 3.49e-13 4.40e-12 ✓ sig. —
Peripheral arterial disease Stroke
24 genes
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9 of 24 corroborated by 2+ sources
WWOX(1), SH2B3(2), DLGAP2(1), HDAC9(2), PTPRG(1), SMARCA4(1), TCF7L2(1), LPL(1), MTHFR(2), ATXN2(1), IL6(2), TWIST1(1) +12 more
0.050 0.136 3.49e-13 4.40e-12 ✓ sig. Cluster 307 →
Cone dystrophy Stargardt disease
7 genes
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4 of 7 corroborated by 2+ sources
ABCA4(4), CNGB3(3), PRPH2(2), CRB1(1), KCNV2(3), CERKL(1), RHO(1)
0.117 0.250 3.54e-13 4.45e-12 ✓ sig. Cluster 7 →
Congenital malformation syndromes associated with short stature Noonan syndrome
5 genes
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5 of 5 corroborated by 2+ sources
BRAF(7), PTPN11(7), LZTR1(7), RIT1(6), SOS2(6)
0.128 0.833 3.62e-13 4.55e-12 ✓ sig. Cluster 42 →
Myositis Polyarticular juvenile idiopathic arthritis
8 genes
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3 of 8 corroborated by 2+ sources
UBE2L3(1), HLA-DQB1(2), PHTF1(1), PTPN22(3), RSBN1(1), TYK2(1), STAT4(3), PRR5L(1)
0.093 0.250 3.68e-13 4.62e-12 ✓ sig. —
Sebaceous gland disease Seborrheic dermatitis
6 genes
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HERC2(1), RALY(1), IRF4(1), TYR(1), MC1R(1), SLC45A2(1)
0.130 0.429 3.72e-13 4.67e-12 ✓ sig. Cluster 162 →
Blood coagulation disorder Thrombosis
7 genes
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7 of 7 corroborated by 2+ sources
F2(3), HMOX1(2), SERPINC1(2), F5(3), PROC(2), VKORC1(2), F10(2)
0.111 0.292 3.72e-13 4.67e-12 ✓ sig. Cluster 55 →
Hemorrhage Thrombosis
7 genes
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PLAU(1), F2(1), PLAT(1), BDKRB2(1), VKORC1(1), P2RY12(1), PODXL(1)
0.111 0.292 3.72e-13 4.67e-12 ✓ sig. Cluster 55 →
Myopia Retinitis pigmentosa
22 genes
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20 of 22 corroborated by 2+ sources
COL2A1(2), CACNA1F(2), COL11A1(2), COL18A1(1), PDE6B(6), LRPAP1(5), EFEMP1(2), SIX6(2), P4HA2(5), RDH5(2), NDP(2), VPS13B(2) +10 more
0.047 0.165 3.88e-13 4.86e-12 ✓ sig. —
Complement component deficiency Macular degeneration
7 genes
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7 of 7 corroborated by 2+ sources
CFI(4), C2(5), C3(7), CFB(5), SERPING1(3), CFH(4), C9(6)
0.090 0.412 4.02e-13 5.03e-12 ✓ sig. —
Epiphyseal dysplasia Marshall syndrome
5 genes
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5 of 5 corroborated by 2+ sources
SLC26A2(3), COL2A1(3), COL9A1(5), COL9A2(5), COL9A3(5)
0.200 0.500 4.05e-13 5.07e-12 ✓ sig. Cluster 248 →
Digenic hemochromatosis Hemochromatosis
4 genes
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4 of 4 corroborated by 2+ sources
TFR2(7), HFE(7), HAMP(7), HJV(7)
0.267 1.000 4.28e-13 5.34e-12 ✓ sig. Cluster 135 →
Congenital hypothyroidism Congenital hypothyroidism due to absence of thyroid gland
4 genes
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3 of 4 corroborated by 2+ sources
TSHR(3), NKX2-5(2), PAX8(2), SLC26A4(1)
0.267 1.000 4.28e-13 5.34e-12 ✓ sig. Cluster 88 →
Cavernous malformations of cns Cerebral cavernous malformation
4 genes
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4 of 4 corroborated by 2+ sources
KRIT1(6), PDCD10(7), PIK3CA(4), CCM2(7)
0.364 0.667 4.48e-13 5.60e-12 ✓ sig. Cluster 308 →
Apert syndrome Goldenhar syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.333 0.800 4.48e-13 5.60e-12 ✓ sig. Cluster 48 →
Brain ischemia Dermatologic disorder
10 genes
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9 of 10 corroborated by 2+ sources
HSPA1B(1), IL1A(2), IL1B(2), MTHFR(2), SOD2(2), TNF(2), IL6(2), PTGS2(2), IL1RN(2), CCL4(2)
0.078 0.147 4.56e-13 5.69e-12 ✓ sig. —
Nervous system disease Status epilepticus
10 genes
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10 of 10 corroborated by 2+ sources
SCN8A(2), BDNF(2), CASP3(2), NOS1(2), TNF(2), NGF(2), FOS(2), PTGS2(2), ABCB1(2), ABCC2(2)
0.078 0.147 4.56e-13 5.69e-12 ✓ sig. —
Ischemic stroke Venous thrombosis
7 genes
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7 of 7 corroborated by 2+ sources
PLAU(2), F2(2), MTHFR(2), PLAT(2), F5(2), PROC(2), F7(2)
0.104 0.318 4.68e-13 5.83e-12 ✓ sig. Cluster 55 →
Brain ischemia Thyroid neoplasms
9 genes
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9 of 9 corroborated by 2+ sources
TP53(2), IL1B(2), TNF(2), IL6(2), MAPK1(2), PTGS2(2), HIF1A(2), CCL2(2), CXCL10(2)
0.083 0.196 4.69e-13 5.84e-12 ✓ sig. —
Cardiac arrest Catecholaminergic polymorphic ventricular tachycardia
6 genes
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2 of 6 corroborated by 2+ sources
DSG2(1), TRPM4(1), DSP(1), RYR2(7), SCN5A(1), ANK2(3)
0.146 0.300 4.75e-13 5.91e-12 ✓ sig. Cluster 4 →
Psoriasis vulgaris Seborrheic dermatitis
8 genes
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IRF1(1), IL23R(1), IL2RA(1), TYK2(1), ZMIZ1(1), POLI(1), CARD14(1), FAM8A1(1)
0.095 0.216 4.75e-13 5.91e-12 ✓ sig. Cluster 162 →
familial thoracic aortic aneurysm and aortic dissection Loeys-dietz syndrome
5 genes
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5 of 5 corroborated by 2+ sources
FBN1(2), TGFB2(7), MYH11(2), MYLK(2), TGFB3(6)
0.208 0.417 4.78e-13 5.94e-12 ✓ sig. Cluster 12 →
Bile duct disorder Cholelithiasis
6 genes
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MAML3(1), PRKAG2(1), ADCY9(1), GREP1(1), NPM2(1), PKMYT1(1)
0.043 1.000 4.86e-13 6.03e-12 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.