Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 49
16
Diseases
2,413
Unique genes
0.102
Avg. similarity score
Inflammatory skin disease
Most-connected disease (7 links)
Disease
Searched: Pure spastic paraplegia
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Pure spastic paraplegia
Inflammatory skin disease
Respiratory system disease
Eczema
Psoriasis
Asthma
Sclerosing cholangitis
Obstructive pulmonary disease
Ankylosing spondylitis
Dental caries
Psoriasis vulgaris
Intellectual developmental disorder neuropsychiatric
Macrocephaly, dysmorphic facies, and psychomotor retardation
Psoriatic arthritis
Keratoderma, palmoplantar, nagashima type
Neurodevelopmental disorder with congenital malformations
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Inflammatory skin disease | 7 | 7 | 76 |
| Respiratory system disease | 7 | 7 | 241 |
| Eczema | 6 | 6 | 366 |
| Psoriasis | 6 | 6 | 731 |
| Asthma | 6 | 4 | 1,069 |
| Sclerosing cholangitis | 5 | 5 | 232 |
| Obstructive pulmonary disease | 4 | 4 | 559 |
| Ankylosing spondylitis | 3 | 3 | 313 |
| Dental caries | 3 | 3 | 231 |
| Psoriasis vulgaris | 3 | 3 | 54 |
| Intellectual developmental disorder neuropsychiatric | 2 | 2 | 1 |
| Macrocephaly, dysmorphic facies, and psychomotor retardation | 2 | 2 | 1 |
| Psoriatic arthritis | 2 | 2 | 73 |
| Pure spastic paraplegia | 2 | 2 | 1 |
| Keratoderma, palmoplantar, nagashima type | 2 | 1 | 1 |
| Neurodevelopmental disorder with congenital malformations | 2 | 1 | 1 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| HLA-B | 9 / 16 | Ankylosing spondylitis, Asthma, Dental caries, Eczema and 5 more |
| HLA-DQA1 | 9 / 16 | Ankylosing spondylitis, Asthma, Dental caries, Eczema and 5 more |
| RUNX3 | 9 / 16 | Ankylosing spondylitis, Asthma, Eczema, Obstructive pulmonary disease and 5 more |
| TNFAIP3 | 9 / 16 | Ankylosing spondylitis, Asthma, Eczema, Inflammatory skin disease and 5 more |
| EMSY | 8 / 16 | Ankylosing spondylitis, Asthma, Eczema, Inflammatory skin disease and 4 more |
| HLA-DQB1 | 8 / 16 | Ankylosing spondylitis, Asthma, Dental caries, Eczema and 4 more |
| IL2RA | 8 / 16 | Ankylosing spondylitis, Asthma, Eczema, Obstructive pulmonary disease and 4 more |
| NOS2 | 8 / 16 | Ankylosing spondylitis, Asthma, Eczema, Inflammatory skin disease and 4 more |
| TNIP1 | 8 / 16 | Ankylosing spondylitis, Asthma, Eczema, Inflammatory skin disease and 4 more |
| BACH2 | 7 / 16 | Ankylosing spondylitis, Asthma, Eczema, Obstructive pulmonary disease and 3 more |
| ETS1 | 7 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 3 more |
| FAP | 7 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 3 more |
| IFIH1 | 7 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 3 more |
| IL18R1 | 7 / 16 | Ankylosing spondylitis, Asthma, Eczema, Obstructive pulmonary disease and 3 more |
| IL23R | 7 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 3 more |
| IRF1 | 7 / 16 | Ankylosing spondylitis, Asthma, Obstructive pulmonary disease, Psoriasis and 3 more |
| PSMA6 | 7 / 16 | Ankylosing spondylitis, Asthma, Eczema, Inflammatory skin disease and 3 more |
| SMAD3 | 7 / 16 | Ankylosing spondylitis, Asthma, Eczema, Obstructive pulmonary disease and 3 more |
| UBAC2 | 7 / 16 | Ankylosing spondylitis, Asthma, Eczema, Obstructive pulmonary disease and 3 more |
| CLEC16A | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| ERAP1 | 6 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 2 more |
| GRHL3 | 6 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 2 more |
| HDAC7 | 6 / 16 | Ankylosing spondylitis, Asthma, Obstructive pulmonary disease, Psoriasis and 2 more |
| HLA-DRB1 | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| IFNLR1 | 6 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 2 more |
| IKZF1 | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| IL2 | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| IL6R | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| KCNH7 | 6 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 2 more |
| LCE3A | 6 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 2 more |
| LCE3B | 6 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 2 more |
| MYRF | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| NDFIP1 | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| PTPN2 | 6 / 16 | Ankylosing spondylitis, Eczema, Inflammatory skin disease, Psoriasis and 2 more |
| RORC | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| STAT3 | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| TMEM258 | 6 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 2 more |
| TSPAN14 | 6 / 16 | Ankylosing spondylitis, Asthma, Obstructive pulmonary disease, Psoriasis and 2 more |
| ADAM19 | 5 / 16 | Asthma, Eczema, Inflammatory skin disease, Obstructive pulmonary disease and 1 more |
| ASAP2 | 5 / 16 | Ankylosing spondylitis, Asthma, Obstructive pulmonary disease, Psoriasis and 1 more |
| ATG5 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| CCL20 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| CORO1A | 5 / 16 | Ankylosing spondylitis, Dental caries, Obstructive pulmonary disease, Psoriasis and 1 more |
| CSMD1 | 5 / 16 | Asthma, Eczema, Inflammatory skin disease, Obstructive pulmonary disease and 1 more |
| GSDMB | 5 / 16 | Ankylosing spondylitis, Asthma, Obstructive pulmonary disease, Psoriasis and 1 more |
| HLA-DOB | 5 / 16 | Asthma, Obstructive pulmonary disease, Psoriasis, Psoriatic arthritis and 1 more |
| HLA-DRB5 | 5 / 16 | Asthma, Dental caries, Eczema, Obstructive pulmonary disease and 1 more |
| IL13 | 5 / 16 | Asthma, Eczema, Psoriasis, Psoriasis vulgaris and 1 more |
| IL1R1 | 5 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 1 more |
| IL21 | 5 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 1 more |
| IL7R | 5 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 1 more |
| ITGAL | 5 / 16 | Ankylosing spondylitis, Obstructive pulmonary disease, Psoriasis, Respiratory system disease and 1 more |
| JAK2 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| JAZF1 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| KIF3B | 5 / 16 | Ankylosing spondylitis, Asthma, Obstructive pulmonary disease, Psoriasis and 1 more |
| KPNA3 | 5 / 16 | Eczema, Inflammatory skin disease, Obstructive pulmonary disease, Psoriasis and 1 more |
| LTBR | 5 / 16 | Ankylosing spondylitis, Obstructive pulmonary disease, Psoriasis, Respiratory system disease and 1 more |
| MAPK3 | 5 / 16 | Ankylosing spondylitis, Dental caries, Obstructive pulmonary disease, Psoriasis and 1 more |
| MICA | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Psoriatic arthritis and 1 more |
| NFKB1 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| NOD2 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| PLCL1 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| PLXNC1 | 5 / 16 | Asthma, Eczema, Obstructive pulmonary disease, Psoriasis and 1 more |
| POFUT1 | 5 / 16 | Ankylosing spondylitis, Asthma, Obstructive pulmonary disease, Psoriasis and 1 more |
| POLI | 5 / 16 | Asthma, Eczema, Inflammatory skin disease, Psoriasis and 1 more |
| PRKCQ | 5 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 1 more |
| PRR5L | 5 / 16 | Asthma, Eczema, Inflammatory skin disease, Psoriasis and 1 more |
| PTCD2 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| PTPRK | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| RERE | 5 / 16 | Asthma, Eczema, Obstructive pulmonary disease, Psoriasis and 1 more |
| RMI2 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Psoriasis vulgaris and 1 more |
| RPS26 | 5 / 16 | Asthma, Eczema, Inflammatory skin disease, Obstructive pulmonary disease and 1 more |
| SBNO2 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| SETD1A | 5 / 16 | Ankylosing spondylitis, Obstructive pulmonary disease, Psoriasis, Psoriasis vulgaris and 1 more |
| SLC9A4 | 5 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 1 more |
| SOCS3 | 5 / 16 | Asthma, Eczema, Inflammatory skin disease, Psoriasis and 1 more |
| SPMIP7 | 5 / 16 | Ankylosing spondylitis, Asthma, Eczema, Psoriasis and 1 more |
| STAT2 | 5 / 16 | Eczema, Inflammatory skin disease, Psoriasis, Psoriasis vulgaris and 1 more |
| TAGAP | 5 / 16 | Ankylosing spondylitis, Eczema, Psoriasis, Psoriasis vulgaris and 1 more |
| TAP2 | 5 / 16 | Ankylosing spondylitis, Asthma, Dental caries, Psoriasis and 1 more |
| THEMIS | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| TNFRSF14 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| TRAF3IP2 | 5 / 16 | Eczema, Inflammatory skin disease, Psoriasis, Psoriasis vulgaris and 1 more |
| TTC33 | 5 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Respiratory system disease and 1 more |
| TYK2 | 5 / 16 | Ankylosing spondylitis, Psoriasis, Psoriasis vulgaris, Psoriatic arthritis and 1 more |
| ACO1 | 4 / 16 | Asthma, Eczema, Inflammatory skin disease, Psoriasis |
| ADCY3 | 4 / 16 | Ankylosing spondylitis, Dental caries, Psoriasis, Sclerosing cholangitis |
| AHR | 4 / 16 | Ankylosing spondylitis, Psoriasis, Respiratory system disease, Sclerosing cholangitis |
| ANKRD55 | 4 / 16 | Ankylosing spondylitis, Eczema, Psoriasis, Sclerosing cholangitis |
| AP5B1 | 4 / 16 | Asthma, Eczema, Psoriasis, Respiratory system disease |
| ATXN2 | 4 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Sclerosing cholangitis |
| BLTP1 | 4 / 16 | Asthma, Eczema, Inflammatory skin disease, Psoriasis |
| BSN | 4 / 16 | Ankylosing spondylitis, Obstructive pulmonary disease, Psoriasis, Sclerosing cholangitis |
| C1ORF141 | 4 / 16 | Ankylosing spondylitis, Psoriasis, Psoriatic arthritis, Sclerosing cholangitis |
| CAMK2G | 4 / 16 | Asthma, Obstructive pulmonary disease, Psoriasis, Psoriasis vulgaris |
| CAPSL | 4 / 16 | Ankylosing spondylitis, Asthma, Eczema, Respiratory system disease |
| CCL2 | 4 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Sclerosing cholangitis |
| CD28 | 4 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Sclerosing cholangitis |
| CD40 | 4 / 16 | Ankylosing spondylitis, Asthma, Psoriasis, Sclerosing cholangitis |
| CDKAL1 | 4 / 16 | Ankylosing spondylitis, Psoriasis, Psoriasis vulgaris, Sclerosing cholangitis |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Inflammatory bowel disease | KEGG | 56 / 66 | 4.2× | 1.36e-29 | 4.15e-26 ✓ sig. |
| Allograft rejection | KEGG | 34 / 39 | 4.3× | 3.28e-19 | 2.18e-16 ✓ sig. |
| Type I diabetes mellitus | KEGG | 34 / 44 | 3.8× | 4.85e-16 | 1.82e-13 ✓ sig. |
| Th17 cell differentiation | KEGG | 60 / 109 | 2.7× | 6.27e-16 | 2.27e-13 ✓ sig. |
| Asthma | KEGG | 27 / 32 | 4.2× | 9.38e-15 | 2.68e-12 ✓ sig. |
| Graft-versus-host disease | KEGG | 32 / 45 | 3.5× | 1.91e-13 | 4.19e-11 ✓ sig. |
| Cytokine-cytokine receptor interaction | KEGG | 111 / 298 | 1.9× | 3.02e-12 | 5.15e-10 ✓ sig. |
| Autoimmune thyroid disease | KEGG | 34 / 54 | 3.1× | 7.39e-12 | 1.16e-9 ✓ sig. |
| Interleukin-4 and Interleukin-13 signaling | Reactome | 52 / 108 | 2.4× | 4.95e-11 | 6.33e-9 ✓ sig. |
| Intestinal immune network for IgA production | KEGG | 31 / 50 | 3.1× | 1.11e-10 | 1.28e-8 ✓ sig. |
| Leishmaniasis | KEGG | 41 / 78 | 2.6× | 1.76e-10 | 1.93e-8 ✓ sig. |
| Th1 and Th2 cell differentiation | KEGG | 46 / 93 | 2.5× | 2.05e-10 | 2.21e-8 ✓ sig. |
| Interleukin-10 signaling | Reactome | 29 / 47 | 3.1× | 5.27e-10 | 5.24e-8 ✓ sig. |
| Rheumatoid arthritis | KEGG | 44 / 95 | 2.3× | 6.88e-9 | 5.29e-7 ✓ sig. |
| Human T-cell leukemia virus 1 infection | KEGG | 81 / 224 | 1.8× | 1.29e-8 | 9.30e-7 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| inflammatory response | GO:0006954 | 141 / 467 | 2.3× | 2.46e-23 | 6.24e-20 ✓ sig. |
| immune response | GO:0006955 | 149 / 543 | 2.1× | 3.80e-20 | 6.16e-17 ✓ sig. |
| positive regulation of transcription by RNA polymerase II | GO:0045944 | 249 / 1,208 | 1.6× | 6.65e-15 | 4.69e-12 ✓ sig. |
| cytokine-mediated signaling pathway | GO:0019221 | 54 / 145 | 2.9× | 8.61e-14 | 5.04e-11 ✓ sig. |
| cell surface receptor signaling pathway via JAK-STAT | GO:0007259 | 34 / 67 | 3.9× | 8.83e-14 | 5.14e-11 ✓ sig. |
| positive regulation of type II interferon production | GO:0032729 | 36 / 77 | 3.6× | 4.07e-13 | 2.06e-10 ✓ sig. |
| peptide antigen assembly with MHC class II protein complex | GO:0002503 | 15 / 16 | 7.3× | 6.27e-13 | 3.06e-10 ✓ sig. |
| positive regulation of T cell proliferation | GO:0042102 | 32 / 67 | 3.7× | 3.95e-12 | 1.65e-9 ✓ sig. |
| antigen processing and presentation of peptide or polysaccharide antigen via MHC class II | GO:0002504 | 14 / 15 | 7.2× | 4.58e-12 | 1.88e-9 ✓ sig. |
| positive regulation of T cell activation | GO:0050870 | 25 / 45 | 4.3× | 1.23e-11 | 4.65e-9 ✓ sig. |
| positive regulation of DNA-templated transcription | GO:0045893 | 166 / 778 | 1.7× | 1.75e-11 | 6.31e-9 ✓ sig. |
| positive regulation of interleukin-17 production | GO:0032740 | 18 / 27 | 5.2× | 1.38e-10 | 4.07e-8 ✓ sig. |
| positive regulation of inflammatory response | GO:0050729 | 43 / 122 | 2.7× | 2.23e-10 | 6.28e-8 ✓ sig. |
| antigen processing and presentation of exogenous peptide antigen via MHC class II | GO:0019886 | 19 / 31 | 4.7× | 3.60e-10 | 9.58e-8 ✓ sig. |
| response to lipopolysaccharide | GO:0032496 | 51 / 161 | 2.5× | 4.10e-10 | 1.08e-7 ✓ sig. |