Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital cartilage disorder Epiphyseal dysplasia
7 genes
Show details
7 of 7 corroborated by 2+ sources
SLC26A2(3), COL2A1(3), COMP(3), COL9A1(5), COL9A2(5), COL9A3(5), MATN3(3)
0.206 0.700 5.98e-18 1.03e-16 ✓ sig. —
Behcet disease Giant cell arteritis
10 genes
Show details
4 of 10 corroborated by 2+ sources
HLA-DRB1(2), IL4(1), MBL2(1), TLR4(2), CCL2(1), HLA-B(4), PTPN22(2), FCGR3A(1), IL18(1), IL21R(1)
0.088 0.556 5.86e-18 1.01e-16 ✓ sig. —
Developmental and epileptic encephalopathy Developmental disability
23 genes
Show details
22 of 23 corroborated by 2+ sources
UBE3A(1), PTEN(2), GRIN2B(4), KCNQ2(7), NTRK2(6), SCN8A(7), CHRNA4(2), ARHGEF9(4), CASK(3), MECP2(2), PPP3CA(6), SLC2A1(2) +11 more
0.067 0.161 5.71e-18 9.81e-17 ✓ sig. Cluster 6 →
Autoimmune hepatitis Hashimoto disease
9 genes
Show details
5 of 9 corroborated by 2+ sources
SH2B3(1), C1S(2), HLA-DQA1(1), HLA-DRB1(2), ICOS(1), ATXN2(1), IL6(2), CTLA4(3), STAT4(2)
0.158 0.333 5.54e-18 9.53e-17 ✓ sig. —
Atopic dermatitis Obstructive airway disease
14 genes
Show details
4 of 14 corroborated by 2+ sources
GSTP1(1), GSTT1(1), IL1B(2), MBL2(1), TLR4(1), TNF(1), IL6(2), GSTM1(1), VDR(1), TGFB1(1), CTLA4(1), CYP1A1(2) +2 more
0.092 0.212 5.42e-18 9.34e-17 ✓ sig. —
Thrombocythemia Thrombocytosis
5 genes
Show details
5 of 5 corroborated by 2+ sources
SH2B3(4), MPL(7), THPO(7), JAK2(6), CALR(4)
0.625 0.833 4.99e-18 8.60e-17 ✓ sig. Cluster 53 →
Psychiatric disorders Tourette syndrome
29 genes
Show details
1 of 29 corroborated by 2+ sources
CAMTA1(1), DCC(1), LSAMP(1), PTPRF(1), RIMS1(1), SORCS3(1), TCF4(1), THSD7A(1), TMEM106B(1), DRD2(1), ANKS1B(1), CACNA1C(2) +17 more
0.065 0.132 4.82e-18 8.32e-17 ✓ sig. Cluster 69 →
Majewski syndrome Short-rib thoracic dysplasia
7 genes
Show details
7 of 7 corroborated by 2+ sources
NEK1(4), IFT80(2), DYNC2H1(2), DYNC2LI1(4), IFT172(4), TTC21B(2), WDR35(5)
0.241 0.583 4.75e-18 8.20e-17 ✓ sig. Cluster 22 →
Glaucoma Macular degeneration
18 genes
Show details
9 of 18 corroborated by 2+ sources
CFI(3), APOE(3), HERC2(1), C2(3), C3(3), PON1(1), RAD51B(1), CFB(3), CETP(1), CFH(3), HERPUD1(1), ARMS2(3) +6 more
0.063 0.269 4.69e-18 8.09e-17 ✓ sig. —
Complement component deficiency Terminal complement component deficiency
6 genes
Show details
6 of 6 corroborated by 2+ sources
C8B(4), C5(5), C9(4), C8A(4), C6(5), C7(5)
0.316 0.857 4.68e-18 8.09e-17 ✓ sig. Cluster 383 →
Dentin dysplasia Hypomaturation amelogenesis imperfecta
6 genes
Show details
6 of 6 corroborated by 2+ sources
SLC24A4(2), AMELX(2), KLK4(2), MMP20(2), ODAPH(2), WDR72(2)
0.316 0.857 4.68e-18 8.09e-17 ✓ sig. Cluster 366 →
Chromosome y microdeletion syndrome Spermatogenic failure, y-linked
6 genes
Show details
6 of 6 corroborated by 2+ sources
DDX3Y(5), DAZ1(4), DAZ2(4), DAZ3(4), RBMY1A1(4), USP9Y(5)
0.353 0.750 4.54e-18 7.87e-17 ✓ sig. —
Bipolar disorder Parkinson disease
103 genes
Show details
53 of 103 corroborated by 2+ sources
RERE(1), INS(2), WWOX(1), GFAP(2), ATP1A3(2), APOE(2), CACNA2D3(1), CAMK1D(1), CNTNAP2(3), DLG2(2), ESR2(2), FSTL5(3) +91 more
0.063 0.195 4.43e-18 7.67e-17 ✓ sig. Cluster 2 →
Cholecystolithiasis Intrahepatic cholestasis of pregnancy
11 genes
Show details
3 of 11 corroborated by 2+ sources
SERPINA1(1), ABCG8(2), SHROOM3(1), GCKR(1), ABCB1(1), ATP8B1(3), HNF4A(1), CYP7A1(1), ABCB4(3), UBXN2B(1), SULT2A1(1)
0.072 0.550 4.33e-18 7.51e-17 ✓ sig. —
Brain ischemia Hypersensitivity
13 genes
Show details
13 of 13 corroborated by 2+ sources
IL1B(2), MTHFR(2), TNF(2), IL6(2), ALB(2), CCL2(2), IL17A(2), TNFRSF1A(2), TNFRSF1B(2), IL18(2), CCL11(2), CCL3(2) +1 more
0.102 0.186 4.23e-18 7.35e-17 ✓ sig. —
Depression Psychotic disorders
24 genes
Show details
5 of 24 corroborated by 2+ sources
CD34(1), NPAS3(1), PCNT(1), BDNF(2), MAOA(1), AVP(2), HTR1B(2), TGFB1(1), CACNA1C(1), CRHR1(1), CSF2RB(1), NR3C1(2) +12 more
0.063 0.192 3.66e-18 6.36e-17 ✓ sig. —
Platelet disorder Platelet-type bleeding disorder
7 genes
Show details
7 of 7 corroborated by 2+ sources
ITGB3(5), TPM4(4), TBXA2R(5), FLI1(5), GP6(7), EPHB2(5), CD36(3)
0.259 0.538 3.26e-18 5.66e-17 ✓ sig. Cluster 33 →
Congenital muscular dystrophy due to dystroglycanopathy Walker-warburg syndrome
6 genes
Show details
6 of 6 corroborated by 2+ sources
GMPPB(2), LARGE1(3), CRPPA(3), POMGNT1(3), FKRP(3), B3GALNT2(3)
0.333 0.857 3.03e-18 5.27e-17 ✓ sig. Cluster 14 →
Dentinogenesis imperfecta Hypomaturation amelogenesis imperfecta
6 genes
Show details
6 of 6 corroborated by 2+ sources
SLC24A4(2), AMELX(2), KLK4(2), MMP20(2), ODAPH(2), WDR72(2)
0.333 0.857 3.03e-18 5.27e-17 ✓ sig. Cluster 366 →
Macular degeneration Retinopathy
12 genes
Show details
7 of 12 corroborated by 2+ sources
ABCA4(3), CFI(3), C2(3), C3(3), CD46(1), PDGFB(1), RPL3(1), CETP(1), CFH(3), RDH5(1), ARMS2(3), RPGR(3)
0.111 0.231 2.94e-18 5.12e-17 ✓ sig. Cluster 187 →
Megacystis microcolon intestinal hypoperistalsis syndrome Visceral myopathy
5 genes
Show details
5 of 5 corroborated by 2+ sources
MYH11(5), MYLK(6), LMOD1(5), ACTG2(6), MYL9(4)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. Cluster 220 →
Childhood ataxia with cns hypomyelination Congenital or early infantile cach syndrome
5 genes
Show details
5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(2), EIF2B2(2), EIF2B4(2), EIF2B5(2)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. Cluster 170 →
Childhood ataxia with cns hypomyelination Cree leukoencephalopathy
5 genes
Show details
5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(2), EIF2B2(2), EIF2B4(2), EIF2B5(2)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. Cluster 170 →
Childhood ataxia with cns hypomyelination Vanishing white matter disease
5 genes
Show details
5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(3), EIF2B2(3), EIF2B4(3), EIF2B5(3)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. Cluster 170 →
Disseminated superficial actinic porokeratosis Porokeratosis
5 genes
Show details
5 of 5 corroborated by 2+ sources
MVK(6), FDPS(7), SART3(2), MVD(6), SLC17A9(6)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.