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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hypogonadism Hypopituitarism
10 genes
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7 of 10 corroborated by 2+ sources
CYP17A1(2), IL17RD(1), TACR3(3), CYP19A1(3), PRL(2), TAC3(2), GNRH1(2), KISS1R(1), PROP1(1), GNRHR(2)
0.089 0.217 1.64e-14 2.26e-13 ✓ sig. Cluster 54 →
Dravet syndrome Rolandic epilepsy
6 genes
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6 of 6 corroborated by 2+ sources
GABRG2(3), SCN1A(5), SCN1B(3), SCN2A(2), PCDH19(3), SCN9A(2)
0.120 0.750 1.62e-14 2.23e-13 ✓ sig. Cluster 47 →
Hypertrophy Ventricular dysfunction
9 genes
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AGT(1), IGF2R(1), CTNNB1(1), CSF3(1), SIRT1(1), LEPR(1), SIRT6(1), GAA(1), PNPLA2(1)
0.103 0.196 1.55e-14 2.14e-13 ✓ sig. —
Diverticular disease Metabolic syndrome
61 genes
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3 of 61 corroborated by 2+ sources
RREB1(1), BMPR1B(2), ADK(1), ABHD17A(1), ARHGAP15(2), FSTL5(1), ICA1L(1), JAZF1(1), KLF16(1), LCORL(1), MAML3(1), MMS22L(1) +49 more
0.041 0.245 1.52e-14 2.09e-13 ✓ sig. —
Congenital hypothyroidism due to absence of thyroid gland Thyroid agenesis
4 genes
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TSHR(1), NKX2-5(1), PAX8(1), SLC26A4(1)
0.500 1.000 1.49e-14 2.06e-13 ✓ sig. Cluster 88 →
Congenital malformation syndromes predominantly affecting facial appearance Cryptophthalmos syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.500 1.000 1.49e-14 2.06e-13 ✓ sig. Cluster 48 →
Congenital malformation syndromes predominantly affecting facial appearance Cyclocephaly
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.500 1.000 1.49e-14 2.06e-13 ✓ sig. Cluster 48 →
Cryptophthalmos syndrome Warburg micro syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.500 1.000 1.49e-14 2.06e-13 ✓ sig. Cluster 48 →
Cyclocephaly Warburg micro syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.500 1.000 1.49e-14 2.06e-13 ✓ sig. Cluster 48 →
Hyper-igm immunodeficiency syndrome Hyper-immunoglobulin m syndrome
4 genes
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4 of 4 corroborated by 2+ sources
AICDA(6), CD40LG(5), CD40(6), UNG(5)
0.500 1.000 1.49e-14 2.06e-13 ✓ sig. Cluster 131 →
Mandibulofacial dysostosis Treacher collins syndrome
4 genes
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4 of 4 corroborated by 2+ sources
POLR1C(7), TCOF1(6), POLR1D(7), POLR1B(6)
0.500 1.000 1.49e-14 2.06e-13 ✓ sig. —
Carney-stratakis syndrome hereditary pheochromocytoma-paraganglioma
4 genes
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4 of 4 corroborated by 2+ sources
SDHB(5), SDHD(5), SDHA(2), SDHC(5)
0.500 1.000 1.49e-14 2.06e-13 ✓ sig. Cluster 81 →
Hashimoto disease Latent autoimmune diabetes in adults
6 genes
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1 of 6 corroborated by 2+ sources
SH2B3(1), HLA-DQA1(1), ATXN2(1), BACH2(1), CTLA4(3), PTPN22(1)
0.176 0.500 1.47e-14 2.04e-13 ✓ sig. —
Crest syndrome Systemic scleroderma
6 genes
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1 of 6 corroborated by 2+ sources
HLA-DRB5(1), IRF5(2), FCGR2B(1), FCGR3B(1), STAT4(1), TNPO3(1)
0.194 0.400 1.46e-14 2.02e-13 ✓ sig. Cluster 25 →
Astrocytoma Scoliosis
60 genes
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5 of 60 corroborated by 2+ sources
WWOX(1), NOTCH1(2), C6orf118(1), CTNNA3(1), DAB1(1), DENND4A(1), DNAH14(1), DOCK1(1), EPHA4(1), GPATCH2L(1), HDAC9(1), HNF4G(1) +48 more
0.047 0.199 1.46e-14 2.02e-13 ✓ sig. —
Ellis-van creveld syndrome Majewski syndrome
5 genes
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3 of 5 corroborated by 2+ sources
EVC(7), EVC2(7), DYNC2LI1(3), WDR35(1), TRAF3IP1(1)
0.294 0.556 1.38e-14 1.92e-13 ✓ sig. —
Vitamin b deficiency Vitamin deficiency disorder
5 genes
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1 of 5 corroborated by 2+ sources
FUT2(2), TCN2(1), CUBN(1), TCN1(1), OOSP3(1)
0.294 0.556 1.38e-14 1.92e-13 ✓ sig. Cluster 106 →
Megaloblastic anemia Vitamin deficiency disorder
5 genes
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3 of 5 corroborated by 2+ sources
FUT2(1), TCN2(3), CUBN(2), TCN1(2), OOSP3(1)
0.294 0.556 1.38e-14 1.92e-13 ✓ sig. Cluster 106 →
Angioedema Hereditary angioedema
6 genes
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6 of 6 corroborated by 2+ sources
KNG1(6), SERPING1(7), F12(7), ANGPT1(5), MYOF(5), HS3ST6(4)
0.102 0.857 1.37e-14 1.91e-13 ✓ sig. —
Myelodysplastic syndrome Myeloid leukemia
12 genes
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6 of 12 corroborated by 2+ sources
GATA2(3), RUNX1(4), TERT(3), CTNNA1(1), JAK2(3), KRAS(2), DNMT3A(3), DAPK1(1), MYC(1), STAG2(1), BMI1(1), LYL1(1)
0.065 0.261 1.37e-14 1.91e-13 ✓ sig. Cluster 53 →
Idiopathic steroid-resistant nephrotic syndrome Nephrotic syndrome, focal segmental type
5 genes
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4 of 5 corroborated by 2+ sources
ACTN4(2), MYO1E(2), PAX2(2), ANLN(1), CRB2(2)
0.172 1.000 1.36e-14 1.90e-13 ✓ sig. —
Androgenetic alopecia Osteoarthritis
59 genes
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8 of 59 corroborated by 2+ sources
KANSL1(1), FGFR3(1), TEAD1(1), AKAP1(1), ARHGAP15(1), ARL17B(1), CCDC91(1), CDC5L(1), CDKAL1(1), CLIC4(2), CLIC5(1), CRADD(1) +47 more
0.055 0.145 1.34e-14 1.87e-13 ✓ sig. —
Anemia Iron deficiency anemia
7 genes
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4 of 7 corroborated by 2+ sources
HFE(2), PON1(1), TF(1), TNF(2), SLC11A2(2), GPX1(1), TMPRSS6(3)
0.080 0.700 1.32e-14 1.84e-13 ✓ sig. —
Erythematosquamous dermatosis Sebaceous gland disease
6 genes
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HERC2(1), RALY(1), IRF4(1), TYR(1), MC1R(1), SLC45A2(1)
0.194 0.429 1.20e-14 1.68e-13 ✓ sig. Cluster 162 →
Atopic dermatitis Lung disease
12 genes
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4 of 12 corroborated by 2+ sources
GSTP1(1), GSTT1(1), IL1B(2), IL2(1), TNF(2), GSTM1(1), TGFB1(2), IL13(2), IL18(1), TLR2(1), IL4R(1), NAT2(1)
0.077 0.182 1.19e-14 1.66e-13 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.