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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hemangiosarcoma Uterine neoplasms
6 genes
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VEGFA(1), CTNNB1(1), CSF3(1), KRAS(1), MYC(1), CCND1(1)
0.118 0.333 2.71e-12 3.11e-11 ✓ sig. Cluster 3 →
Conduction disorder of the heart Short qt syndrome
5 genes
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3 of 5 corroborated by 2+ sources
TRPM4(1), CACNA1C(3), KCNH2(5), KCNQ1(6), SCN5A(1)
0.161 0.455 2.71e-12 3.11e-11 ✓ sig. —
Immune system disease Thyroid disease
8 genes
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FAM76B(1), HLA-DQA1(1), ATXN2(1), CEP43(1), CTLA4(1), PTPN22(1), STAT4(1), RNF39(1)
0.087 0.174 2.68e-12 3.08e-11 ✓ sig. —
Epilepsy of infancy with migrating focal seizures West syndrome
5 genes
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5 of 5 corroborated by 2+ sources
KCNQ2(2), SCN1A(2), SCN2A(2), PLCB1(2), PIGA(2)
0.143 0.556 2.48e-12 2.85e-11 ✓ sig. —
Malignant migrating partial seizures of infancy West syndrome
5 genes
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4 of 5 corroborated by 2+ sources
KCNQ2(2), SCN1A(2), SCN2A(1), PLCB1(2), PIGA(2)
0.143 0.556 2.48e-12 2.85e-11 ✓ sig. —
Bone disease Bone fracture
10 genes
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1 of 10 corroborated by 2+ sources
AXIN1(1), FMN2(1), RSPO3(1), SUPT3H(1), CYP19A1(1), ESR1(3), CCDC170(1), SEM1(1), SFRP4(1), STARD3NL(1)
0.071 0.147 2.36e-12 2.72e-11 ✓ sig. Cluster 299 →
Congenital ear anomaly Usher syndrome
7 genes
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6 of 7 corroborated by 2+ sources
PCDH15(7), USH2A(7), ADGRV1(7), CDH23(8), MYO7A(7), C10orf105(1), PDZD7(6)
0.101 0.226 2.36e-12 2.71e-11 ✓ sig. Cluster 26 →
Osteogenesis imperfecta Osteoporosis
10 genes
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8 of 10 corroborated by 2+ sources
SERPINF1(6), COL1A1(7), COL1A2(7), WNT1(7), LRP5(4), IFITM5(6), P4HB(4), PLS3(1), SP7(6), PGGHG(1)
0.057 0.256 2.16e-12 2.49e-11 ✓ sig. Cluster 68 →
Distal myopathy Vitelliform macular dystrophy
4 genes
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4 of 4 corroborated by 2+ sources
BEST1(4), IMPG1(4), IMPG2(4), PRPH2(4)
0.250 0.800 2.14e-12 2.46e-11 ✓ sig. Cluster 303 →
Dental caries Lung cancer
37 genes
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3 of 37 corroborated by 2+ sources
RTEL1(1), ABT1(1), CPNE4(1), EPHX2(1), FUT2(1), H4C8(1), HLA-DQA1(1), HLA-DRB5(1), HMGN4(1), MOG(1), MSX2(1), MTMR3(1) +25 more
0.044 0.160 2.13e-12 2.46e-11 ✓ sig. Cluster 20 →
Lamellar cataract Sutural cataract
4 genes
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4 of 4 corroborated by 2+ sources
BFSP2(2), CRYGS(2), MIP(2), CRYBA1(2)
0.286 0.667 2.11e-12 2.44e-11 ✓ sig. Cluster 43 →
Hoyeraal hreidarsson syndrome Telomere-related pulmonary fibrosis and/or bone marrow failure
4 genes
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4 of 4 corroborated by 2+ sources
RTEL1(7), TERT(7), PARN(7), POT1(4)
0.308 0.500 2.09e-12 2.42e-11 ✓ sig. Cluster 64 →
Platelet-type bleeding disorder Thrombasthenia
4 genes
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4 of 4 corroborated by 2+ sources
ITGB3(6), ITGA2(2), ITGA2B(6), RASGRP2(7)
0.190 1.000 2.07e-12 2.39e-11 ✓ sig. Cluster 33 →
Focal glomerulosclerosis Glomerulonephritis
10 genes
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5 of 10 corroborated by 2+ sources
WT1(2), COL4A4(2), AGT(2), LAMB2(1), SERPINE1(1), APOL1(2), PLCE1(1), INF2(1), MYH9(1), NPHS1(2)
0.069 0.175 2.07e-12 2.39e-11 ✓ sig. —
B-cell acute lymphoblastic leukemia Systemic sclerosis
11 genes
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2 of 11 corroborated by 2+ sources
ARHGAP31(1), IRF1(1), CCR6(2), GSDMB(1), NFKB1(1), ZPBP2(1), STAT4(2), IKZF3(1), GLS(1), NAB1(1), GRB10(1)
0.062 0.183 2.06e-12 2.38e-11 ✓ sig. —
Irritable bowel syndrome Post-traumatic stress disorder
17 genes
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BLTP1(1), ABT1(1), DCC(1), FOXP2(1), HMGN4(1), SORCS3(1), TCF4(1), CD40(1), FAM120A(1), LRFN5(1), NCAM1(1), PCLO(1) +5 more
0.053 0.127 2.04e-12 2.37e-11 ✓ sig. Cluster 2 →
Diffuse cutaneous systemic sclerosis Scleroderma
6 genes
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5 of 6 corroborated by 2+ sources
TAP2(1), CAV1(2), IRF5(4), STAT4(2), TGFBR1(2), CCN2(2)
0.130 0.261 2.01e-12 2.33e-11 ✓ sig. Cluster 25 →
Panhypopituitarism Pituitary stalk interruption syndrome
7 genes
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1 of 7 corroborated by 2+ sources
HESX1(1), PROKR2(1), CHD7(1), WDR11(1), NSMF(1), KISS1R(1), LHX4(2)
0.103 0.226 1.98e-12 2.30e-11 ✓ sig. Cluster 54 →
Hypertensive nephropathy Urolithiasis
7 genes
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PRKAG2(1), WDR72(1), FTO(1), HBB(1), PDILT(1), OVOL1(1), SLC22A2(1)
0.084 0.350 1.96e-12 2.28e-11 ✓ sig. —
Arthrogryposis multiplex congenita Sheldon-hall syndrome
5 genes
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5 of 5 corroborated by 2+ sources
MYH3(2), TPM2(3), NALCN(2), TNNI2(2), TNNT3(3)
0.068 1.000 1.94e-12 2.25e-11 ✓ sig. —
Dystonia musculorum deformans Torsion dystonia
4 genes
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4 of 4 corroborated by 2+ sources
THAP1(3), TOR1A(2), TUBB4A(3), HPCA(4)
0.308 0.571 1.88e-12 2.18e-11 ✓ sig. Cluster 167 →
Exudative retinopathy Exudative vitreoretinopathy
4 genes
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3 of 4 corroborated by 2+ sources
PRSS23(1), FZD4(5), RCBTB1(2), NDP(4)
0.308 0.571 1.88e-12 2.18e-11 ✓ sig. Cluster 288 →
Genetic torsion dystonia Torsion dystonia
4 genes
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3 of 4 corroborated by 2+ sources
THAP1(3), TOR1A(1), TUBB4A(3), HPCA(3)
0.308 0.571 1.88e-12 2.18e-11 ✓ sig. Cluster 167 →
Congenital muscular dystrophy Myopathy
8 genes
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4 of 8 corroborated by 2+ sources
CRPPA(3), RYR1(3), DYSF(1), LAMA2(1), ITGA7(3), CAPN3(1), FKRP(4), COL6A2(1)
0.063 0.364 1.79e-12 2.08e-11 ✓ sig. Cluster 14 →
Hypotension Necrosis
9 genes
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CAT(1), AGT(1), IL1B(1), TNF(1), IL6(1), POMC(1), SOD1(1), IFNG(1), CTF1(1)
0.079 0.164 1.74e-12 2.02e-11 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.