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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Behcet disease Vasculitis
7 genes
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2 of 7 corroborated by 2+ sources
GAK(1), NOS3(1), ADA2(4), CTLA4(2), IL12RB2(1), CCR3(1), CPLX1(1)
0.055 0.241 7.73e-10 7.06e-9 ✓ sig. —
Hereditary breast and ovarian cancer syndrome Lynch syndrome
5 genes
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5 of 5 corroborated by 2+ sources
CHEK2(4), ATM(3), MRE11(2), PALB2(2), RAD51D(3)
0.083 0.333 7.76e-10 7.09e-9 ✓ sig. —
Clonal hematopoiesis Uterine fibroid
12 genes
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CHEK2(1), RTEL1(1), RUNX1(1), TERT(1), TTC28(1), PARP1(1), THRB(1), ATM(1), STN1(1), POGLUT3(1), ELF1(1), NPAT(1)
0.034 0.214 7.82e-10 7.15e-9 ✓ sig. —
Cervical intraepithelial neoplasia Nasopharyngeal neoplasms
4 genes
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HLA-DQA1(1), HLA-DQB1(1), HLA-B(1), CLPTM1L(1)
0.087 0.667 7.87e-10 7.19e-9 ✓ sig. Cluster 1 →
Spermatogenic failure Teratozoospermia
7 genes
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7 of 7 corroborated by 2+ sources
PMFBP1(4), SPATA16(4), DNAH10(5), ARMC2(5), CFAP43(5), DNAH1(5), TTC21A(4)
0.052 0.259 7.95e-10 7.26e-9 ✓ sig. Cluster 31 →
Bradycardia Hyperproinsulinemia
4 genes
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4 of 4 corroborated by 2+ sources
PRL(2), DRD2(2), GNRH1(2), LHB(2)
0.125 0.444 8.00e-10 7.30e-9 ✓ sig. —
Hepatic insufficiency Urethral obstruction
4 genes
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NOS3(1), RELA(1), TGFB1(1), NOS2(1)
0.125 0.444 8.00e-10 7.30e-9 ✓ sig. Cluster 153 →
Ehlers-danlos syndrome Keratoconus
8 genes
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8 of 8 corroborated by 2+ sources
COL12A1(2), COL5A1(8), PLOD1(5), SMAD3(2), COL1A1(7), LOX(2), ZNF469(2), COL5A2(8)
0.054 0.182 8.07e-10 7.36e-9 ✓ sig. Cluster 12 →
Brain aneurysm Migraine
16 genes
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4 of 16 corroborated by 2+ sources
CTNNA3(1), FBN2(2), LINGO2(1), PTPRD(1), PLCE1(1), CNNM2(1), NT5C2(1), TRPM8(3), CFDP1(1), EDNRA(4), ATP2B1(1), ESRRG(1) +4 more
0.034 0.184 8.11e-10 7.39e-9 ✓ sig. —
Cerebellar atrophy Polyneuropathy
5 genes
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1 of 5 corroborated by 2+ sources
DYNC1H1(1), PNPLA6(2), SMC1A(1), BIVM-ERCC5(1), ERCC5(1)
0.100 0.208 8.19e-10 7.46e-9 ✓ sig. Cluster 239 →
Cone dystrophy Nystagmus
6 genes
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3 of 6 corroborated by 2+ sources
CNGB3(3), GUCY2D(1), RPGRIP1(2), NMNAT1(1), KCNV2(3), RHO(1)
0.079 0.158 8.52e-10 7.76e-9 ✓ sig. Cluster 7 →
Cardiac arrhythmia Cardiac embolism
8 genes
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1 of 8 corroborated by 2+ sources
PRRX1(1), GORAB(1), KCNN3(1), CAV2(1), PITX2(1), ZFHX3(1), NAV3(2), NEURL1(1)
0.057 0.160 8.68e-10 7.90e-9 ✓ sig. —
Arteriosclerosis Hyperlipoproteinemia
6 genes
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5 of 6 corroborated by 2+ sources
ABCG8(1), APOB(2), APOE(5), LDLR(2), NOS3(2), PON1(2)
0.079 0.150 8.73e-10 7.94e-9 ✓ sig. Cluster 141 →
Diffuse large b-cell lymphoma Lymphoma
7 genes
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BCL2(1), KMT2D(1), EXOC2(1), IRF4(1), CDKN2A(1), EZH2(1), MYD88(1)
0.067 0.132 8.79e-10 7.99e-9 ✓ sig. Cluster 1 →
Brain ischemia Transient ischemic attack
6 genes
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5 of 6 corroborated by 2+ sources
CYCS(2), SOD2(2), SOD1(2), CSF3(1), IL1RN(2), CASP9(2)
0.067 0.250 8.95e-10 8.13e-9 ✓ sig. —
Gastrointestinal stromal tumor Microform holoprosencephaly
5 genes
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5 of 5 corroborated by 2+ sources
CDON(3), GLI2(3), PTCH1(3), SUFU(3), DISP1(3)
0.085 0.313 9.06e-10 8.24e-9 ✓ sig. Cluster 96 →
46,xx sex reversal 46,xy partial gonadal dysgenesis
3 genes
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3 of 3 corroborated by 2+ sources
NR5A1(3), SOX9(2), SRY(2)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. Cluster 38 →
Aneuploidy Chromosomal instability
3 genes
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CKAP5(1), AURKA(1), KIF11(1)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. —
Secondary polycythemia Thalassemia
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(2), HBA2(2), HBB(2)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. —
Telomere syndrome Telomere-related pulmonary fibrosis and/or bone marrow failure
3 genes
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3 of 3 corroborated by 2+ sources
RTEL1(6), TERT(5), PARN(6)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. Cluster 64 →
Hoyeraal hreidarsson syndrome Telomere syndrome
3 genes
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3 of 3 corroborated by 2+ sources
RTEL1(2), TERT(4), PARN(2)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. Cluster 64 →
Henoch schoenlein purpura Lupus nephritis
5 genes
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3 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), C3(2), HLA-DQB1(1), CCL2(1)
0.089 0.278 9.85e-10 8.93e-9 ✓ sig. Cluster 1 →
Angina pectoris Oral submucous fibrosis
4 genes
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3 of 4 corroborated by 2+ sources
TNF(2), MMP1(2), MMP9(2), CXCL8(1)
0.138 0.333 1.02e-9 9.21e-9 ✓ sig. Cluster 76 →
Cachexia Oral submucous fibrosis
4 genes
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3 of 4 corroborated by 2+ sources
TNF(2), IL6(2), PTGS2(2), CXCL8(1)
0.138 0.333 1.02e-9 9.21e-9 ✓ sig. Cluster 76 →
Graft-versus-host disease T-cell leukemia-lymphoma
5 genes
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5 of 5 corroborated by 2+ sources
IL10(3), IL2(2), IFNG(2), CTLA4(2), TNFSF8(2)
0.094 0.238 1.04e-9 9.37e-9 ✓ sig. Cluster 147 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.