Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Afibrinogenemia Congenital hypofibrinogenemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
FGA(2), FGG(2), FGB(2)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 149 →
Afibrinogenemia Hypofibrinogenemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
FGA(3), FGG(3), FGB(3)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 149 →
Alpha thalassemia Hemoglobin barts fetalis syndrome
3 genes
Show details
2 of 3 corroborated by 2+ sources
HBA1(3), HBA2(3), ATRX(1)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 72 →
Alpha thalassemia Hemoglobin h disease
3 genes
Show details
2 of 3 corroborated by 2+ sources
HBA1(5), HBA2(6), ATRX(1)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 72 →
Cholesterol ester transfer protein deficiency Hyperalphalipoproteinemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
SCARB1(2), APOC3(3), CETP(6)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. —
Congenital pain insensitivity Hereditary sensory and autonomic neuropathy
4 genes
Show details
4 of 4 corroborated by 2+ sources
NGF(5), SCN11A(6), SCN9A(5), PRDM12(4)
0.200 1.000 1.66e-12 1.93e-11 ✓ sig. —
Amyloidosis Visceral amyloidosis
4 genes
Show details
4 of 4 corroborated by 2+ sources
APOA1(3), FGA(5), LYZ(4), B2M(5)
0.200 1.000 1.66e-12 1.93e-11 ✓ sig. Cluster 228 →
Eosinophilia Respiratory system disease
17 genes
Show details
5 of 17 corroborated by 2+ sources
EMSY(1), FOXO1(1), HLA-DQA1(3), HLA-DRB1(3), JAZF1(1), RORA(1), SHARPIN(3), TIMP2(1), HS3ST4(1), SMAD3(1), JAK2(1), CLEC16A(1) +5 more
0.050 0.152 1.65e-12 1.93e-11 ✓ sig. —
Necrosis Proteinuria
8 genes
Show details
AGT(1), CTSB(1), FAS(1), POMC(1), SOD1(1), IFNG(1), IL1RN(1), HAVCR1(1)
0.089 0.190 1.67e-12 1.95e-11 ✓ sig. —
Nervous system disease Non-neoplastic peripheral nervous system disease
9 genes
Show details
9 of 9 corroborated by 2+ sources
DPYD(2), GFAP(2), NGF(2), PNPLA6(2), CSF3(2), ABCB1(2), CYP2C8(2), CASP9(2), ATF3(2)
0.079 0.167 1.68e-12 1.95e-11 ✓ sig. Cluster 243 →
Centronuclear myopathy Congenital fiber type disproportion myopathy
5 genes
Show details
4 of 5 corroborated by 2+ sources
ACTA1(3), MAP3K20(3), MTM1(1), RYR1(3), TPM3(3)
0.172 0.455 1.68e-12 1.96e-11 ✓ sig. Cluster 189 →
Congenital heart disease Craniofacial abnormalities
17 genes
Show details
17 of 17 corroborated by 2+ sources
FGF8(4), TBX1(2), UFD1(2), NOTCH1(2), FOXP2(3), TGFB2(2), RCAN1(2), PITX2(2), AHR(3), STRA6(2), PTCH1(2), LRP2(2) +5 more
0.054 0.109 1.69e-12 1.96e-11 ✓ sig. Cluster 111 →
Congenital nasopharyngeal atresia Situs ambiguus
6 genes
Show details
DNAH5(1), CCDC39(1), CCDC40(1), DNAAF1(1), DNAAF11(1), CFAP298(1)
0.130 0.286 1.71e-12 1.99e-11 ✓ sig. —
Hypotension Necrosis
9 genes
Show details
CAT(1), AGT(1), IL1B(1), TNF(1), IL6(1), POMC(1), SOD1(1), IFNG(1), CTF1(1)
0.079 0.164 1.74e-12 2.02e-11 ✓ sig. —
Congenital muscular dystrophy Myopathy
8 genes
Show details
4 of 8 corroborated by 2+ sources
CRPPA(3), RYR1(3), DYSF(1), LAMA2(1), ITGA7(3), CAPN3(1), FKRP(4), COL6A2(1)
0.063 0.364 1.79e-12 2.08e-11 ✓ sig. Cluster 14 →
Dystonia musculorum deformans Torsion dystonia
4 genes
Show details
4 of 4 corroborated by 2+ sources
THAP1(3), TOR1A(2), TUBB4A(3), HPCA(4)
0.308 0.571 1.88e-12 2.18e-11 ✓ sig. Cluster 167 →
Exudative retinopathy Exudative vitreoretinopathy
4 genes
Show details
3 of 4 corroborated by 2+ sources
PRSS23(1), FZD4(5), RCBTB1(2), NDP(4)
0.308 0.571 1.88e-12 2.18e-11 ✓ sig. Cluster 288 →
Genetic torsion dystonia Torsion dystonia
4 genes
Show details
3 of 4 corroborated by 2+ sources
THAP1(3), TOR1A(1), TUBB4A(3), HPCA(3)
0.308 0.571 1.88e-12 2.18e-11 ✓ sig. Cluster 167 →
Arthrogryposis multiplex congenita Sheldon-hall syndrome
5 genes
Show details
5 of 5 corroborated by 2+ sources
MYH3(2), TPM2(3), NALCN(2), TNNI2(2), TNNT3(3)
0.068 1.000 1.94e-12 2.25e-11 ✓ sig. —
Hypertensive nephropathy Urolithiasis
7 genes
Show details
PRKAG2(1), WDR72(1), FTO(1), HBB(1), PDILT(1), OVOL1(1), SLC22A2(1)
0.084 0.350 1.96e-12 2.28e-11 ✓ sig. —
Panhypopituitarism Pituitary stalk interruption syndrome
7 genes
Show details
1 of 7 corroborated by 2+ sources
HESX1(1), PROKR2(1), CHD7(1), WDR11(1), NSMF(1), KISS1R(1), LHX4(2)
0.103 0.226 1.98e-12 2.30e-11 ✓ sig. Cluster 54 →
Diffuse cutaneous systemic sclerosis Scleroderma
6 genes
Show details
5 of 6 corroborated by 2+ sources
TAP2(1), CAV1(2), IRF5(4), STAT4(2), TGFBR1(2), CCN2(2)
0.130 0.261 2.01e-12 2.33e-11 ✓ sig. Cluster 25 →
Irritable bowel syndrome Post-traumatic stress disorder
17 genes
Show details
BLTP1(1), ABT1(1), DCC(1), FOXP2(1), HMGN4(1), SORCS3(1), TCF4(1), CD40(1), FAM120A(1), LRFN5(1), NCAM1(1), PCLO(1) +5 more
0.053 0.127 2.04e-12 2.37e-11 ✓ sig. Cluster 2 →
B-cell acute lymphoblastic leukemia Systemic sclerosis
11 genes
Show details
2 of 11 corroborated by 2+ sources
ARHGAP31(1), IRF1(1), CCR6(2), GSDMB(1), NFKB1(1), ZPBP2(1), STAT4(2), IKZF3(1), GLS(1), NAB1(1), GRB10(1)
0.062 0.183 2.06e-12 2.38e-11 ✓ sig. —
Platelet-type bleeding disorder Thrombasthenia
4 genes
Show details
4 of 4 corroborated by 2+ sources
ITGB3(6), ITGA2(2), ITGA2B(6), RASGRP2(7)
0.190 1.000 2.07e-12 2.39e-11 ✓ sig. Cluster 33 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.