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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Irritable bowel syndrome Obstructive pulmonary disease
30 genes
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RERE(1), RREB1(1), ASCC2(1), CADM2(1), CELF4(1), EMSY(1), FOXP2(1), GLIS3(1), HEYL(1), HLA-C(1), MECOM(1), MPHOSPH9(1) +18 more
0.045 0.224 6.27e-16 9.49e-15 ✓ sig. —
Crest syndrome Diffuse cutaneous systemic sclerosis
7 genes
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4 of 7 corroborated by 2+ sources
HLA-DRB1(1), CAV1(2), CCR6(2), IRF5(3), STAT4(2), TNPO3(1), CCN2(1)
0.184 0.333 6.92e-16 1.05e-14 ✓ sig. Cluster 25 →
Color vision deficiency Pelvic organ prolapse
39 genes
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WT1(1), SOX5(1), WWOX(1), CACNA2D3(1), CAMK1D(1), DISC1(1), FARP1(1), GLIS3(1), NAALADL2(1), NRP1(1), PSD3(1), RBFOX1(1) +27 more
0.037 0.281 7.13e-16 1.08e-14 ✓ sig. —
Carcinoma Urinary bladder neoplasms
19 genes
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TP53(1), EGFR(1), ESR2(1), RHOA(1), BCL2(1), ESR1(1), GSTP1(1), SOD2(1), STAT3(1), PTGS2(1), HIF1A(1), CSF3(1) +7 more
0.066 0.134 7.64e-16 1.15e-14 ✓ sig. Cluster 5 →
Anemia Beta thalassemia
9 genes
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8 of 9 corroborated by 2+ sources
HBA2(2), HFE(2), EPO(3), TNF(2), HBS1L(2), GATA1(4), GH1(1), HAMP(2), HBB(8)
0.093 0.429 7.67e-16 1.16e-14 ✓ sig. —
Cleft palate Orofacial cleft
14 genes
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11 of 14 corroborated by 2+ sources
MEIS2(1), TBX22(1), COL2A1(2), TP63(5), FGF10(2), IRF6(4), MSX1(4), FGFR1(2), CDH1(2), DLG1(2), RYK(2), ARHGAP29(3) +2 more
0.069 0.233 7.71e-16 1.16e-14 ✓ sig. Cluster 63 →
Colonic neoplasms Liver neoplasms
21 genes
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1 of 21 corroborated by 2+ sources
TP53(1), GRIK2(1), IGF2(1), MACIR(1), PPARG(1), STAT3(1), TNF(1), CTNNB1(1), TRMT11(1), KRAS(1), APC(1), CDKN1A(1) +9 more
0.063 0.138 7.85e-16 1.18e-14 ✓ sig. Cluster 5 →
Anophthalmia Colobomatous microphthalmia
6 genes
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6 of 6 corroborated by 2+ sources
SOX2(3), STRA6(3), OTX2(2), RAX(3), VSX2(2), RBP4(2)
0.250 0.429 8.09e-16 1.22e-14 ✓ sig. Cluster 56 →
Age-related macular degeneration C3 glomerulonephritis
7 genes
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7 of 7 corroborated by 2+ sources
CFHR1(4), CFI(5), C3(4), CFB(4), CFH(4), CFHR5(6), CFHR3(3)
0.082 0.875 8.13e-16 1.22e-14 ✓ sig. —
Thrombosis Venous thrombosis
8 genes
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PLAU(1), EPO(1), F2(1), PLAT(1), SERPINC1(1), F5(1), PROC(1), F3(1)
0.133 0.364 8.55e-16 1.28e-14 ✓ sig. Cluster 55 →
Cardiomegaly Fatty liver, alcoholic
13 genes
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13 of 13 corroborated by 2+ sources
LEP(2), PPARA(2), SOD2(2), TNF(2), POMC(2), AKT1(2), CYP1B1(2), CYP2E1(2), HTR2B(2), PPARD(2), UCP2(2), CEBPB(2) +1 more
0.082 0.155 9.10e-16 1.37e-14 ✓ sig. —
Hemophilia a Thrombophilia
7 genes
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5 of 7 corroborated by 2+ sources
HLA-DQA1(1), F2(6), MTHFR(3), PLAT(3), F8(7), TFPI(1), F9(6)
0.167 0.438 9.35e-16 1.40e-14 ✓ sig. Cluster 55 →
Autoimmune hepatitis Sjogren syndrome
10 genes
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7 of 10 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), IL10(2), ATXN2(1), IL6(2), HLA-DQB1(2), HLA-DPB1(2), CTLA4(1), STAT4(3), TSBP1(1)
0.100 0.263 9.58e-16 1.44e-14 ✓ sig. —
Catalepsy Hypotension
8 genes
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8 of 8 corroborated by 2+ sources
AGT(2), GCG(2), PRL(2), POMC(2), DRD1(2), DRD2(2), CNR1(2), ADORA1(2)
0.105 0.500 1.04e-15 1.56e-14 ✓ sig. Cluster 13 →
Meniere disease nonsyndromic genetic hearing loss
12 genes
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12 of 12 corroborated by 2+ sources
OTOGL(2), PCDH15(2), OTOG(2), TNC(2), MYO6(2), CDH23(2), MYO7A(2), WFS1(2), MYH14(2), TECTA(2), EPS8L2(2), USH1C(2)
0.087 0.179 1.07e-15 1.60e-14 ✓ sig. Cluster 26 →
Essential thrombocythemia Thrombocythemia
5 genes
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5 of 5 corroborated by 2+ sources
SH2B3(4), MPL(6), THPO(4), JAK2(6), CALR(4)
0.333 0.833 1.07e-15 1.60e-14 ✓ sig. Cluster 53 →
Essential thrombocythemia Thrombocytosis
5 genes
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5 of 5 corroborated by 2+ sources
SH2B3(3), MPL(4), THPO(4), JAK2(3), CALR(3)
0.333 0.833 1.07e-15 1.60e-14 ✓ sig. Cluster 53 →
Desbuquois syndrome Intellectual developmental disorder
79 genes
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79 of 79 corroborated by 2+ sources
ANKRD11(2), NF1(2), NFIX(2), SKI(2), HDAC4(2), FGD1(2), KIF7(2), ZSWIM6(2), NPR2(2), ACTB(2), PEX7(2), ALG3(2) +67 more
0.061 0.139 1.10e-15 1.65e-14 ✓ sig. —
Cerebrovascular disorder Peripheral vascular disease
10 genes
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5 of 10 corroborated by 2+ sources
HDAC9(2), ATXN2(1), TWIST1(1), ABO(2), CELSR2(1), LPA(1), PSRC1(1), F5(2), ANK2(2), EDNRA(2)
0.093 0.303 1.12e-15 1.68e-14 ✓ sig. Cluster 307 →
Microcephaly Seckel syndrome
9 genes
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8 of 9 corroborated by 2+ sources
CENPE(6), TRAIP(5), CDK5RAP2(4), RBBP8(7), PLK4(6), CEP152(6), CEP63(6), CPAP(6), RNF17(1)
0.078 0.500 1.13e-15 1.69e-14 ✓ sig. Cluster 101 →
Catalepsy Hyperkinesia
7 genes
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7 of 7 corroborated by 2+ sources
GCG(2), DRD1(2), DRD2(2), CCK(2), NTS(2), CALCA(2), TH(2)
0.163 0.438 1.19e-15 1.77e-14 ✓ sig. Cluster 13 →
Congenital nemaline myopathy Nemaline myopathy
5 genes
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5 of 5 corroborated by 2+ sources
ACTA1(3), LMOD3(7), NEB(7), KLHL41(7), KLHL40(6)
0.263 1.000 1.19e-15 1.77e-14 ✓ sig. Cluster 51 →
Esophageal neoplasms Esophageal squamous cell carcinoma
14 genes
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1 of 14 corroborated by 2+ sources
WWOX(1), TP53(1), EGFR(1), ALDH2(1), SOD2(1), PTGS2(1), TPM1(1), PRDX1(1), ADH1B(1), CDKN2A(1), CASP8(2), CCND1(1) +2 more
0.074 0.189 1.22e-15 1.81e-14 ✓ sig. Cluster 5 →
Bone disease Cartilage disease
8 genes
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1 of 8 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), NPPC(2), DAB2IP(1), PDZRN3(1), CETN3(1), FAM180A(1), MTPN(1)
0.090 0.571 1.33e-15 1.98e-14 ✓ sig. —
Russell-silver syndrome Silver-russell syndrome
5 genes
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5 of 5 corroborated by 2+ sources
HMGA2(6), FOXP2(2), IGF2(7), CDKN1C(3), PLAG1(5)
0.357 0.714 1.34e-15 2.00e-14 ✓ sig. Cluster 199 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.