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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital muscular dystrophy Limb girdle muscular dystrophy
12 genes
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11 of 12 corroborated by 2+ sources
GMPPB(4), CRPPA(4), LMNA(4), DYSF(6), LAMA2(1), POMT1(4), POMT2(4), POMGNT1(5), CAPN3(7), FKRP(6), FKTN(5), POMK(4)
0.245 0.545 4.67e-27 1.27e-25 ✓ sig. Cluster 14 →
Lipodystrophy Partial lipodystrophy
9 genes
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9 of 9 corroborated by 2+ sources
AKT2(3), PPARG(4), CAV1(6), LMNA(7), ADRA2A(4), LMNB2(4), CIDEC(3), PLIN1(3), LIPE(3)
0.450 0.900 3.63e-27 9.92e-26 ✓ sig. Cluster 71 →
Congenital nonbullous ichthyosiform erythroderma Lamellar ichthyosis
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(3), SDR9C7(3), SULT2B1(3), ABCA12(4), ALOX12B(4), ALOXE3(4), PNPLA1(2), NIPAL4(3), CERS3(2)
0.500 0.750 3.29e-27 9.00e-26 ✓ sig. Cluster 233 →
Pharyngeal disorder Respiratory system disease
19 genes
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IKZF1(1), TET2(1), TNFRSF13B(1), ABO(1), IL7R(1), ITGAL(1), LTBR(1), NFKB1(1), HORMAD2(1), DYSF(1), ADSS1(1), SLC20A2(1) +7 more
0.075 0.613 2.90e-27 7.95e-26 ✓ sig. —
Coronary artery disease Venous thromboembolism
90 genes
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14 of 90 corroborated by 2+ sources
JMJD1C(1), ZFPM2(1), SH2B3(3), ADGRL2(1), ADH5(1), BTNL2(2), CPS1(1), CUX2(1), DCHS2(1), FADS1(1), FADS2(1), HINT1(1) +78 more
0.064 0.263 2.68e-27 7.35e-26 ✓ sig. Cluster 78 →
Cone dystrophy Macular dystrophy
14 genes
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3 of 14 corroborated by 2+ sources
ABCA4(1), CNGA3(1), CNGB3(3), PRPH2(2), CACNA1F(1), PDE6B(1), USH2A(1), CRB1(1), GUCY2D(1), CERKL(1), GUCA1A(7), RPGR(1) +2 more
0.203 0.368 2.22e-27 6.08e-26 ✓ sig. Cluster 7 →
Posterior polar cataract Posterior subcapsular cataract
8 genes
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8 of 8 corroborated by 2+ sources
PITX3(3), EPHA2(3), CHMP4B(3), CRYAB(3), MIP(2), PANK4(3), CRYBA1(3), GJA3(2)
0.667 1.000 2.11e-27 5.80e-26 ✓ sig. Cluster 43 →
Cryptogenic west syndrome Infantile spasms
8 genes
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CRH(1), POMC(1), STXBP1(1), TSC2(1), TSC1(1), UPB1(1), HSD17B4(1), MC2R(1)
0.667 1.000 2.11e-27 5.80e-26 ✓ sig. Cluster 328 →
Idiopathic basal ganglia calcification Primary familial brain calcification
8 genes
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8 of 8 corroborated by 2+ sources
PDGFRB(6), XPR1(6), PDGFB(7), JAM2(6), SLC20A2(5), CMPK2(5), MYORG(6), NAA60(5)
0.667 1.000 2.11e-27 5.80e-26 ✓ sig. Cluster 390 →
Colonic neoplasms Stomach neoplasms
39 genes
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1 of 39 corroborated by 2+ sources
HNF1B(1), DPYD(1), TP53(1), CDX2(1), EGFR(1), FBP1(1), PRR5-ARHGAP8(1), SYMPK(2), IL1B(1), MTHFR(1), PPARG(1), SOD2(1) +27 more
0.083 0.192 2.08e-27 5.74e-26 ✓ sig. Cluster 5 →
Bradycardia Hypotension
14 genes
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AGT(1), CRH(1), GCG(1), PRL(1), PDYN(1), POMC(1), TAC1(1), DRD2(1), KNG1(1), EDN1(1), ADORA1(1), EDN3(1) +2 more
0.175 0.538 1.89e-27 5.23e-26 ✓ sig. Cluster 13 →
Cystic fibrosis Lung disease
19 genes
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12 of 19 corroborated by 2+ sources
SERPINA1(4), MPO(2), GSTT1(1), IL1B(1), TNF(2), GSTM1(1), PTGS2(2), TGFB1(5), SCNN1A(2), MIF(3), MUC4(1), ADRB2(2) +7 more
0.131 0.306 1.89e-27 5.23e-26 ✓ sig. Cluster 119 →
Ciliary dyskinesia, with or without situs inversus Congenital nasopharyngeal atresia
10 genes
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DNAH5(1), CCDC40(1), DNAH11(1), DNAI1(1), RSPH4A(1), DNAAF3(1), DNAAF19(1), DNAAF4(1), DRC1(1), ODAD3(1)
0.313 0.909 1.60e-27 4.44e-26 ✓ sig. Cluster 9 →
Brugada syndrome Cardiac arrhythmia
19 genes
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16 of 19 corroborated by 2+ sources
COL5A1(1), PKP2(5), TBX5(1), DSP(1), KCNJ2(2), CACNA1C(7), KCNH2(4), KCNQ1(2), RYR2(2), SCN5A(8), TTN(2), ANK2(7) +7 more
0.133 0.302 1.44e-27 4.01e-26 ✓ sig. Cluster 4 →
Crest syndrome Systemic sclerosis
15 genes
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7 of 15 corroborated by 2+ sources
FBN1(1), DGKQ(1), HLA-DRB1(2), CAV1(2), ATG5(1), CCR6(2), IRF5(3), FCGR2B(1), FCGR3B(1), STAT4(2), TNPO3(1), CCN2(2) +3 more
0.111 0.714 1.40e-27 3.88e-26 ✓ sig. Cluster 25 →
Cardiac arrhythmia Wolff-parkinson-white syndrome
18 genes
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15 of 18 corroborated by 2+ sources
COL5A1(1), TBX5(2), DSP(1), KCNJ2(2), CACNA1C(2), PITX2(2), MYH6(2), CASQ2(2), FLNC(2), KCNH2(2), KCNQ1(2), LMNA(2) +6 more
0.136 0.353 1.33e-27 3.71e-26 ✓ sig. Cluster 4 →
Atherosclerosis Congestive heart failure
27 genes
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25 of 27 corroborated by 2+ sources
AGT(2), APOC1(2), APOE(3), SERPINE1(2), VEGFA(2), NOS3(2), PON1(2), PPARG(2), SOD2(2), STAT3(2), TNF(2), IL6(3) +15 more
0.099 0.227 1.29e-27 3.58e-26 ✓ sig. —
Macular dystrophy Optic atrophy
20 genes
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3 of 20 corroborated by 2+ sources
ABCA4(1), CNGA3(1), CNGB3(1), PRPH2(2), CACNA1F(1), USH2A(1), CRB1(1), GUCY2D(1), PROM1(3), EFEMP1(1), OTX2(1), GPHN(1) +8 more
0.097 0.455 1.20e-27 3.34e-26 ✓ sig. Cluster 7 →
Congenital cataract Lamellar cataract
11 genes
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11 of 11 corroborated by 2+ sources
BFSP2(4), CRYAA(4), CRYBA4(3), CRYGC(4), CRYAB(3), CRYGD(3), CRYGS(3), HSF4(4), MIP(3), CRYBA1(4), CRYGB(3)
0.180 1.000 1.19e-27 3.32e-26 ✓ sig. Cluster 43 →
Congenital ichthyosis Congenital nonbullous ichthyosiform erythroderma
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(4), SDR9C7(2), ABCA12(4), ALOX12B(4), ALOXE3(4), PNPLA1(4), NIPAL4(3), CERS3(4), CASP14(2)
0.529 0.750 1.17e-27 3.29e-26 ✓ sig. Cluster 233 →
Biliary cirrhosis Sclerosing cholangitis
30 genes
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9 of 30 corroborated by 2+ sources
SH2B3(1), ETS1(1), HLA-DQA1(2), HLA-DRA(1), ATXN2(1), HLA-DQB1(1), ATG5(1), CCR6(1), CCL20(1), CD226(1), CEP43(1), CLEC16A(2) +18 more
0.091 0.234 1.07e-27 2.99e-26 ✓ sig. —
Autoimmune thyroid disease Hyperthyroidism
20 genes
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8 of 20 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRA(2), HLA-DRB1(2), ICOS(1), PDE10A(1), TAP2(1), HLA-DQB1(2), BACH2(1), CTLA4(2), IL2RA(1), PHTF1(1), PTPN22(2) +8 more
0.112 0.377 1.04e-27 2.92e-26 ✓ sig. Cluster 39 →
Benign pemphigus Darier disease
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.727 0.889 1.04e-27 2.91e-26 ✓ sig. Cluster 80 →
Gastroesophageal reflux disease Post-traumatic stress disorder
38 genes
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AFF3(1), CNTNAP5(1), CSMD1(1), DCC(1), FOXP1(1), FOXP2(1), GRM8(1), IP6K1(1), KAZN(1), LINC02210-CRHR1(1), MAD1L1(1), MAPT(1) +26 more
0.085 0.187 8.58e-28 2.41e-26 ✓ sig. Cluster 2 →
22q11.2 deletion syndrome Digeorge syndrome
9 genes
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9 of 9 corroborated by 2+ sources
ARVCF(2), COMT(3), GP1BB(2), HIRA(2), JMJD1C(3), RREB1(3), SEC24C(3), TBX1(6), UFD1(2)
0.450 1.000 6.91e-28 1.94e-26 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.