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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Nuclear cataract Posterior subcapsular cataract
7 genes
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7 of 7 corroborated by 2+ sources
CRYBB2(2), EPHA2(3), CRYAB(3), UNC45B(3), MIP(3), CRYBA1(3), GJA3(3)
0.304 0.636 2.58e-19 4.71e-18 ✓ sig. Cluster 43 →
Muscular dystrophy Walker-warburg syndrome
9 genes
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9 of 9 corroborated by 2+ sources
DAG1(3), GMPPB(2), LARGE1(3), CRPPA(3), POMT1(3), POMT2(3), POMGNT1(3), FKRP(3), FKTN(3)
0.153 0.563 2.56e-19 4.68e-18 ✓ sig. Cluster 14 →
Bradycardia Catalepsy
8 genes
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8 of 8 corroborated by 2+ sources
AGT(2), TRH(2), GCG(2), PRL(2), POMC(2), DRD2(2), ADORA1(2), NTS(2)
0.229 0.500 2.55e-19 4.67e-18 ✓ sig. Cluster 13 →
Hyperinsulinemic hypoglycemia Hyperinsulinism
8 genes
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7 of 8 corroborated by 2+ sources
HADH(6), INSR(6), ABCC8(7), SLC16A1(3), KCNJ11(6), GCK(5), GLUD1(3), SHLD2(1)
0.174 0.727 2.47e-19 4.54e-18 ✓ sig. Cluster 36 →
Hypertensive heart disease Hypertensive nephropathy
7 genes
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PRKAG2(1), SCARB1(1), TCF7L2(1), APOL1(1), FTO(1), PDILT(1), DCDC1(1)
0.292 0.700 2.28e-19 4.19e-18 ✓ sig. —
Congenital nonbullous ichthyosiform erythroderma Ichthyosis
7 genes
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6 of 7 corroborated by 2+ sources
TGM1(2), ABCA12(2), ALOX12B(2), ALOXE3(2), PNPLA1(2), CERS3(2), UGCG(1)
0.318 0.583 2.22e-19 4.08e-18 ✓ sig. Cluster 233 →
Congenital heart disease Ventricular septal defect
15 genes
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11 of 15 corroborated by 2+ sources
TBX1(1), GATA4(3), NKX2-6(3), TBX5(1), BMP7(1), NFATC1(2), GATA5(4), TBX20(3), NKX2-5(3), COL1A2(2), ISL1(3), CITED2(6) +3 more
0.075 0.357 2.15e-19 3.95e-18 ✓ sig. —
X-linked intellectual disability X-linked syndromic intellectual disability
8 genes
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8 of 8 corroborated by 2+ sources
CASK(4), ZC4H2(2), RPL10(4), BRWD3(2), LAS1L(2), NONO(2), DDX3X(4), USP9X(4)
0.107 1.000 1.93e-19 3.55e-18 ✓ sig. —
Pancreatic neoplasms Thyroid neoplasms
14 genes
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1 of 14 corroborated by 2+ sources
HNF1B(1), TERT(1), TP53(1), MSH6(2), PPARG(1), TNF(1), PTGS2(1), HIF1A(1), CTNNB1(1), KLF5(1), IFNA2(1), KRAS(1) +2 more
0.093 0.304 1.88e-19 3.46e-18 ✓ sig. Cluster 5 →
Carcinoma Lung neoplasms
27 genes
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SOX9(1), ACTB(1), PTEN(1), TP53(1), TP63(1), BCL2L1(1), EGFR(1), ESR1(1), GSTP1(1), GSTT1(1), STAT3(1), TLR4(1) +15 more
0.069 0.164 1.79e-19 3.29e-18 ✓ sig. Cluster 5 →
Carcinoma Stomach neoplasms
29 genes
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SOX9(1), TP53(1), BCL2L1(1), EGFR(1), RHOA(1), ENO1(1), GSTP1(1), SOD2(1), STAT3(1), FHIT(1), PTGS2(1), DNMT3B(1) +17 more
0.065 0.176 1.78e-19 3.28e-18 ✓ sig. Cluster 5 →
Cytochrome c oxidase deficiency Leigh syndrome
11 genes
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11 of 11 corroborated by 2+ sources
LRPPRC(5), SCO2(5), SCO1(4), COX15(5), SURF1(6), PET100(2), COX10(5), TACO1(4), COX4I1(2), COX8A(2), PET117(2)
0.094 0.550 1.72e-19 3.17e-18 ✓ sig. Cluster 50 →
Congenital hypothyroidism Congenital thyroid atrophy
6 genes
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4 of 6 corroborated by 2+ sources
TSHR(3), NKX2-5(2), THRA(1), PAX8(2), TSHB(1), IGSF1(2)
0.400 1.000 1.62e-19 3.00e-18 ✓ sig. Cluster 88 →
Congenital hypothyroidism Congenital hypothyroidism without goiter
6 genes
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4 of 6 corroborated by 2+ sources
TSHR(3), NKX2-5(2), THRA(1), PAX8(2), TSHB(1), IGSF1(2)
0.400 1.000 1.62e-19 3.00e-18 ✓ sig. Cluster 88 →
Disseminated intravascular coagulation Venous thrombosis
7 genes
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7 of 7 corroborated by 2+ sources
F13A1(2), F2(2), SERPINC1(2), PROC(2), TFPI(2), F3(2), F7(2)
0.280 0.778 1.51e-19 2.79e-18 ✓ sig. Cluster 55 →
Male infertility Spermatogenic failure
18 genes
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18 of 18 corroborated by 2+ sources
NR5A1(4), DMRT1(3), CATSPER1(5), TDRD9(4), DNAH10(5), SEPTIN4(2), MOV10L1(3), SYCP3(5), STX2(3), PNLDC1(4), SHOC1(4), M1AP(4) +6 more
0.087 0.162 1.50e-19 2.78e-18 ✓ sig. Cluster 31 →
Polymorphous corneal dystrophy Posterior polymorphous corneal dystrophy
5 genes
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5 of 5 corroborated by 2+ sources
COL8A2(4), OVOL2(4), VSX1(4), GRHL2(3), ZEB1(4)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 75 →
Central vertigo Peripheral vertigo
5 genes
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OTOGL(1), ZNF91(1), LYAR(1), QRSL1(1), TMEM128(1)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. —
Hereditary hyperekplexia Hyperekplexia
5 genes
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5 of 5 corroborated by 2+ sources
GPHN(5), SLC6A5(7), GLRA1(5), ATAD1(6), GLRB(5)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 379 →
Congenital or early infantile cach syndrome Cree leukoencephalopathy
5 genes
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5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(2), EIF2B2(2), EIF2B4(2), EIF2B5(2)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 170 →
Congenital or early infantile cach syndrome Vanishing white matter disease
5 genes
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5 of 5 corroborated by 2+ sources
EIF2B3(3), EIF2B1(4), EIF2B2(4), EIF2B4(4), EIF2B5(4)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 170 →
Cree leukoencephalopathy Vanishing white matter disease
5 genes
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5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(3), EIF2B2(3), EIF2B4(3), EIF2B5(3)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 170 →
Bronchus cancer Respiratory system cancer
5 genes
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TERT(1), CHRNA4(1), CHRNA5(1), BRCA2(1), CYP2A6(1)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 294 →
Urinary bladder neoplasms Uterine neoplasms
14 genes
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FGFR3(1), TERT(1), EGFR(1), MTHFR(1), STAT3(1), CSF3(1), JAK2(1), KRAS(1), MYC(1), CLPTM1L(1), CCND1(1), BAP1(1) +2 more
0.084 0.368 1.34e-19 2.50e-18 ✓ sig. —
Febrile convulsion Seizures
12 genes
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11 of 12 corroborated by 2+ sources
NF1(1), ANO3(2), CPA6(5), HCN1(2), SCN8A(5), CHAT(2), GABRG2(5), SCN1A(2), SCN1B(2), SCN2A(5), IMPA2(2), STX1B(2)
0.079 0.545 1.29e-19 2.41e-18 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.