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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Female infertility Oocyte maturation defect
11 genes
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11 of 11 corroborated by 2+ sources
TRIP13(4), PANX1(4), ZFP36L2(5), BTG4(4), PATL2(5), TLE6(4), TUBB8(6), WEE2(4), ZP1(6), ZP2(6), ZP3(6)
0.093 0.440 2.86e-18 5.01e-17 ✓ sig. —
Breast neoplasms Renal cell carcinoma
32 genes
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APRT(1), CAT(1), PTEN(1), TP53(1), PAK1(1), ACHE(1), BCHE(1), GSTP1(1), SOD2(1), IL6(1), RELA(1), PTGS2(1) +20 more
0.051 0.230 2.81e-18 4.93e-17 ✓ sig. Cluster 5 →
Gallstones Hyperlipidemia
19 genes
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5 of 19 corroborated by 2+ sources
ABCA1(1), ABCG8(3), APOE(3), FADS1(1), FADS2(1), MLXIPL(1), VEGFA(1), HMGCR(2), ABO(1), ZPR1(1), GCKR(1), ABCB1(2) +7 more
0.077 0.153 2.75e-18 4.83e-17 ✓ sig. —
Cone dystrophy Night blindness, congenital stationary
9 genes
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5 of 9 corroborated by 2+ sources
ABCA4(1), CACNA1F(3), PDE6B(3), USH2A(1), GUCY2D(4), CABP4(1), RHO(3), RPGR(1), SAG(2)
0.164 0.360 2.42e-18 4.25e-17 ✓ sig. —
Bardet-biedl syndrome Joubert syndrome
12 genes
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7 of 12 corroborated by 2+ sources
KIF7(1), NPHP4(1), RPGRIP1(1), RPGRIP1L(5), NPHP3(1), TMEM67(6), NPHP1(7), CEP290(6), TTC21B(2), IFT74(6), MKS1(7), RLIG1(1)
0.113 0.207 2.37e-18 4.17e-17 ✓ sig. Cluster 8 →
Cushing syndrome Hyperaldosteronism
8 genes
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8 of 8 corroborated by 2+ sources
CYP11B2(3), CACNA1D(2), CACNA1H(5), KCNJ5(6), ATP2B3(2), ATP1A1(2), CLCN2(6), CYP11B1(4)
0.211 0.381 1.89e-18 3.33e-17 ✓ sig. —
autosomal dominant polycystic kidney disease Polycystic kidney disease
7 genes
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7 of 7 corroborated by 2+ sources
ALG8(3), DNAJB11(7), PKD1(8), PKD2(8), IFT140(5), ALG5(7), NEK8(7)
0.143 1.000 1.81e-18 3.19e-17 ✓ sig. —
Age-related macular degeneration Macular and posterior pole degeneration
9 genes
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6 of 9 corroborated by 2+ sources
CFI(4), C3(3), CETP(1), CFH(3), RDH5(1), ARMS2(3), C9(3), SKIC2(1), HTRA1(2)
0.102 0.692 1.73e-18 3.04e-17 ✓ sig. Cluster 187 →
Glioma Obesity
130 genes
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23 of 130 corroborated by 2+ sources
RAI1(3), AKAP6(1), ARHGAP24(1), ARHGEF28(1), C6orf118(1), CARD11(1), CCDC33(1), CDH4(1), CDKAL1(2), CSMD1(1), CTNNA3(1), DCC(1) +118 more
0.071 0.172 1.67e-18 2.95e-17 ✓ sig. —
Brain infarction Lewy body disease
12 genes
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APOE(1), CDKAL1(1), KAZN(1), PTPRD(1), SGK1(1), HS3ST4(1), ATP10A(1), POLD3(1), ABTB2(1), KCNB2(1), RAG1(1), SLC29A4(1)
0.100 0.333 1.64e-18 2.90e-17 ✓ sig. —
Thrombocytopenia Thrombosis
14 genes
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14 of 14 corroborated by 2+ sources
FGA(2), EPO(2), TNF(2), PLAT(2), FCGR2A(2), SERPINC1(2), PF4(2), PROS1(2), P2RY12(2), THBD(2), VWF(2), GP1BA(2) +2 more
0.082 0.311 1.61e-18 2.84e-17 ✓ sig. —
Frontotemporal dementia with motor neuron disease Frontotemporal dementia with or without amyotrophic lateral sclerosis
6 genes
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6 of 6 corroborated by 2+ sources
VCP(7), GRN(2), SQSTM1(7), C9orf72(6), CHCHD10(7), TBK1(7)
0.400 0.750 1.40e-18 2.47e-17 ✓ sig. Cluster 102 →
Alzheimer disease Parkinson disease
153 genes
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52 of 153 corroborated by 2+ sources
KANSL1(1), RERE(1), INS(2), WWOX(2), SCARB2(1), ADARB2(3), AGAP1(1), ALCAM(1), ALDH1A2(3), APOE(6), ARHGEF2(1), BCKDK(1) +141 more
0.059 0.289 1.37e-18 2.43e-17 ✓ sig. Cluster 2 →
Thromboembolism Thrombosis
8 genes
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PLAU(1), F2(1), PLAT(1), F5(1), GAS6(1), PROC(1), PROS1(1), MERTK(1)
0.160 0.667 1.35e-18 2.40e-17 ✓ sig. Cluster 55 →
Hypersensitivity Uveitis
11 genes
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11 of 11 corroborated by 2+ sources
HLA-DRB1(2), IL10(2), IL1B(2), TNF(2), IL6(2), ALB(2), TGFB1(2), HLA-B(3), TNFRSF1A(2), CCR2(2), IL13(2)
0.118 0.333 1.35e-18 2.39e-17 ✓ sig. Cluster 16 →
Psoriatic arthritis Sarcoidosis
17 genes
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6 of 17 corroborated by 2+ sources
HLA-C(2), HLA-DQA1(1), TNXB(1), TAP2(1), TNF(2), HLA-DQB1(2), C1orf141(1), HLA-B(2), IL23R(2), TYK2(1), NOTCH4(1), CCR2(1) +5 more
0.077 0.233 1.19e-18 2.12e-17 ✓ sig. —
Craniodiaphyseal dysplasia Short rib dysplasia-polydactyly syndrome
7 genes
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6 of 7 corroborated by 2+ sources
IFT43(5), IFT122(7), IFT140(3), IFT52(3), WDR19(6), WDR35(6), CILK1(1)
0.250 0.700 1.02e-18 1.81e-17 ✓ sig. Cluster 22 →
Junctional epidermolysis bullosa Other epidermolysis bullosa
6 genes
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6 of 6 corroborated by 2+ sources
PLEC(3), COL17A1(7), LAMB3(6), LAMC2(6), ITGB4(6), ITGA6(6)
0.316 1.000 1.00e-18 1.78e-17 ✓ sig. —
Ichthyosis Lamellar ichthyosis
7 genes
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5 of 7 corroborated by 2+ sources
TGM1(2), ABCA12(3), ALOX12B(3), ALOXE3(3), CYP4F22(3), PNPLA1(1), CERS3(1)
0.292 0.500 9.62e-19 1.71e-17 ✓ sig. Cluster 233 →
Dystonia Torsion dystonia
7 genes
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7 of 7 corroborated by 2+ sources
THAP1(6), EIF2AK2(4), TOR1A(3), TUBB4A(5), CIZ1(3), HPCA(5), SHQ1(3)
0.156 1.000 9.42e-19 1.68e-17 ✓ sig. Cluster 167 →
Gallstones Intrahepatic cholestasis of pregnancy
11 genes
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3 of 11 corroborated by 2+ sources
SERPINA1(1), ABCG8(2), SHROOM3(1), GCKR(1), ABCB1(1), ATP8B1(3), HNF4A(1), CYP7A1(1), ABCB4(3), UBXN2B(1), SULT2A1(1)
0.082 0.550 9.28e-19 1.65e-17 ✓ sig. —
C3 glomerulonephritis Hemolytic uremic syndrome
7 genes
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7 of 7 corroborated by 2+ sources
CFHR1(5), CFI(6), C3(6), CFB(6), CFH(6), CFHR5(6), CFHR3(4)
0.200 0.875 8.39e-19 1.50e-17 ✓ sig. Cluster 359 →
Digitotalar dysmorphism Sheldon-hall syndrome
5 genes
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5 of 5 corroborated by 2+ sources
MYH3(2), TPM2(3), NALCN(2), TNNI2(3), TNNT3(3)
0.714 1.000 8.32e-19 1.49e-17 ✓ sig. Cluster 202 →
Heterotaxy syndrome Situs ambiguus
8 genes
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7 of 8 corroborated by 2+ sources
PKD1L1(4), CIROP(3), CERS1(1), GDF1(2), DAND5(3), MMP21(4), CFAP53(4), NODAL(5)
0.222 0.381 8.23e-19 1.47e-17 ✓ sig. Cluster 46 →
Color vision deficiency Dementia
97 genes
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DMRT1(1), AHCYL2(1), ARHGAP24(1), ASB3(1), AUTS2(1), CAMK1D(1), CCDC171(1), CCDC33(1), CD2AP(1), CDH4(1), CELF4(1), CLYBL(1) +85 more
0.066 0.164 8.19e-19 1.47e-17 ✓ sig. Cluster 2 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.