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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Calcium metabolism disorders Hypocalciuric hypercalcemia
3 genes
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3 of 3 corroborated by 2+ sources
AP2S1(5), GNA11(6), CASR(7)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Hemoglobin m disease Secondary polycythemia
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(3), HBA2(2), HBB(4)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Secondary polycythemia Unstable hemoglobin disease
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(4), HBA2(4), HBB(4)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Liposarcoma Well-differentiated liposarcoma
3 genes
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1 of 3 corroborated by 2+ sources
HMGA2(1), CDK4(2), MDM2(1)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. Cluster 342 →
Citrullinemia Urea cycle disorder
3 genes
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3 of 3 corroborated by 2+ sources
ASS1(7), SLC25A15(2), SLC25A13(3)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. Cluster 367 →
Endometrial neoplasms Ovarian neoplasms
13 genes
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3 of 13 corroborated by 2+ sources
PTEN(1), NPAS3(1), AKT1(2), CXCL8(1), TNFSF10(1), CDH1(1), MYC(1), GALNT3(2), BIRC5(1), EZH2(1), ZEB1(1), SKAP1(2) +1 more
0.052 0.099 9.13e-11 9.13e-10 ✓ sig. —
Aortic dissection Thoracoabdominal aortic aneurysm
4 genes
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3 of 4 corroborated by 2+ sources
FBN1(1), AGT(2), SMAD3(2), TGFBR2(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 66 →
Aortic dissection Ruptured abdominal aortic aneurysm
4 genes
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3 of 4 corroborated by 2+ sources
FBN1(1), AGT(2), SMAD3(2), TGFBR2(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 66 →
Aortic dissection Ruptured aortic aneurysm
4 genes
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3 of 4 corroborated by 2+ sources
FBN1(1), AGT(2), SMAD3(2), TGFBR2(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 66 →
Aortic dissection Ruptured thoracic aortic aneurysm
4 genes
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3 of 4 corroborated by 2+ sources
FBN1(1), AGT(2), SMAD3(2), TGFBR2(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 66 →
Henoch schoenlein purpura Pemphigus
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), C3(2), HLA-DQB1(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 1 →
Lynch syndrome Muir-torre syndrome
4 genes
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4 of 4 corroborated by 2+ sources
MSH2(8), MSH6(8), PMS2(7), MLH1(8)
0.080 1.000 9.05e-11 9.07e-10 ✓ sig. Cluster 166 →
Hyperglycemia monogenic diabetes
5 genes
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5 of 5 corroborated by 2+ sources
INS(3), GCK(3), HNF1A(3), PDX1(2), NEUROD1(2)
0.086 0.500 8.97e-11 8.99e-10 ✓ sig. Cluster 36 →
Coronary restenosis Vascular system injury
4 genes
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4 of 4 corroborated by 2+ sources
ACE(2), SPP1(2), HMOX1(2), TNF(2)
0.190 0.400 8.95e-11 8.98e-10 ✓ sig. —
Central nervous system non-hodgkin lymphoma Crest syndrome
4 genes
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1 of 4 corroborated by 2+ sources
HLA-DRB1(2), HLA-DRB5(1), EXOC2(1), IRF4(1)
0.160 0.571 8.92e-11 8.95e-10 ✓ sig. —
Atherosclerosis Peripheral arterial disease
14 genes
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6 of 14 corroborated by 2+ sources
ABCA1(3), HDAC9(3), LDLR(3), SMARCA4(1), TCF7L2(1), ESR1(3), MTHFR(1), ATXN2(1), IL6(3), CHRNA3(1), TWIST1(1), LPA(2) +2 more
0.049 0.118 8.69e-11 8.72e-10 ✓ sig. Cluster 307 →
Hyperkinesia Hypotension
7 genes
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7 of 7 corroborated by 2+ sources
GRIA1(2), GCG(2), IL2(2), ADORA2A(2), DRD1(2), DRD2(2), OXT(2)
0.074 0.212 8.36e-11 8.40e-10 ✓ sig. Cluster 13 →
Neural tube defect Neural tube defects, folate-sensitive
4 genes
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4 of 4 corroborated by 2+ sources
MTHFR(3), MTRR(3), MTR(3), MTHFD1(3)
0.082 1.000 8.31e-11 8.35e-10 ✓ sig. —
Night blindness, congenital stationary Retinitis punctata albescens
4 genes
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3 of 4 corroborated by 2+ sources
RDH5(2), RHO(4), RLBP1(3), CD63(1)
0.143 0.667 8.09e-11 8.13e-10 ✓ sig. —
Inflammatory skin disease Psoriatic arthritis
9 genes
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2 of 9 corroborated by 2+ sources
IFIH1(1), TNIP1(1), REV3L(1), TRAF3IP2(3), FAP(1), IL23R(1), NOS2(3), TNFAIP3(1), STAT2(1)
0.064 0.123 8.04e-11 8.09e-10 ✓ sig. —
Atrial fibrillation Uterine fibroid
48 genes
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11 of 48 corroborated by 2+ sources
CASZ1(3), HSPG2(3), RUNX1(1), CELA3B(1), ESR2(3), FOXO1(1), HEATR3(1), MDM4(1), NCOR2(1), NKAIN2(1), PIK3C2B(1), SORCS3(1) +36 more
0.043 0.157 7.96e-11 8.01e-10 ✓ sig. —
Cleft lip Craniosynostosis
7 genes
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5 of 7 corroborated by 2+ sources
FGFR3(2), FGF10(3), NOG(1), FGFR2(2), MSX1(1), PTCH1(2), FGFR1(2)
0.078 0.189 7.90e-11 7.96e-10 ✓ sig. Cluster 63 →
Christ-siemens-touraine syndrome Ectodermal dysplasia
4 genes
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3 of 4 corroborated by 2+ sources
EDAR(4), EDA(3), RANBP2(1), EDARADD(5)
0.118 0.800 7.67e-11 7.72e-10 ✓ sig. Cluster 117 →
Progressive myoclonic epilepsy Rolandic epilepsy
6 genes
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6 of 6 corroborated by 2+ sources
SCARB2(6), PRICKLE1(6), PRICKLE2(2), TBC1D24(5), DEPDC5(2), CSTB(2)
0.091 0.250 7.50e-11 7.56e-10 ✓ sig. —
Marfan syndrome Urethral obstruction
6 genes
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3 of 6 corroborated by 2+ sources
TGFB2(2), SMAD3(1), ACTA2(1), NOS2(2), COL3A1(2), HEY2(1)
0.094 0.231 7.28e-11 7.34e-10 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.