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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Canavan disease Fraser syndrome
2 genes
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1 of 2 corroborated by 2+ sources
ASPA(7), SPATA22(1)
0.095 1.000 1.60e-6 9.10e-6 ✓ sig. Cluster 242 →
Benign recurrent intrahepatic cholestasis Intrahepatic cholestasis of pregnancy
2 genes
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2 of 2 corroborated by 2+ sources
ATP8B1(3), ABCB11(3)
0.095 1.000 1.60e-6 9.10e-6 ✓ sig. Cluster 319 →
Glanzmann thrombasthenia Platelet-type bleeding disorder
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(8), ITGA2B(8)
0.095 1.000 1.60e-6 9.10e-6 ✓ sig. Cluster 33 →
Chorioretinopathy with microcephaly Optic atrophy
3 genes
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3 of 3 corroborated by 2+ sources
TUBGCP6(2), PLK4(2), TUBGCP4(2)
0.016 1.000 1.60e-6 9.09e-6 ✓ sig. —
Focal glomerulosclerosis Preeclampsia
6 genes
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6 of 6 corroborated by 2+ sources
ACTN4(2), AGT(2), SERPINE1(2), TRPC6(2), PLCE1(2), EDN1(2)
0.040 0.105 1.59e-6 9.04e-6 ✓ sig. —
Diabetic eye disease Hyperuricemia
5 genes
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2 of 5 corroborated by 2+ sources
RREB1(1), APOE(2), TGFB1(3), GCKR(1), KCNQ1(1)
0.046 0.104 1.58e-6 8.98e-6 ✓ sig. —
Endometriosis Pelvic organ prolapse
15 genes
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5 of 15 corroborated by 2+ sources
WT1(1), ABCC9(3), CAMK1D(1), FOXP2(1), NAALADL2(1), NRP1(3), PTPRD(1), SBF2(1), BCL2(1), DPP6(1), EYA1(1), DUSP1(3) +3 more
0.030 0.108 1.55e-6 8.80e-6 ✓ sig. —
Aortic dissection Upper respiratory tract disorder
3 genes
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3 of 3 corroborated by 2+ sources
SMAD3(3), IL18R1(2), IL1RL1(2)
0.083 0.167 1.51e-6 8.60e-6 ✓ sig. —
Essential tremor Movement disorder
6 genes
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4 of 6 corroborated by 2+ sources
CNTNAP5(1), GSTP1(2), IGF1(3), DRD3(2), DPP6(1), GNAO1(3)
0.040 0.105 1.50e-6 8.52e-6 ✓ sig. Cluster 13 →
Dry eye syndrome Glomerulonephritis
6 genes
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2 of 6 corroborated by 2+ sources
NRXN1(1), THSD7A(1), IL1B(2), IL6(2), FRMD4A(1), DNAJB6(1)
0.040 0.105 1.50e-6 8.52e-6 ✓ sig. —
Hemorrhage Portal hypertension
3 genes
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3 of 3 corroborated by 2+ sources
REN(2), VEGFA(2), EPHA7(2)
0.081 0.200 1.50e-6 8.52e-6 ✓ sig. —
Interstitial lung disease Pulmonary surfactant metabolism dysfunction
3 genes
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2 of 3 corroborated by 2+ sources
BMP1(1), SFTPC(6), ABCA3(7)
0.043 0.500 1.49e-6 8.49e-6 ✓ sig. —
Head and neck neoplasms Mucositis
3 genes
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1 of 3 corroborated by 2+ sources
IL1B(2), CSF3(1), TGFA(1)
0.057 0.375 1.48e-6 8.42e-6 ✓ sig. —
Ectodermal dysplasia Tooth agenesis
4 genes
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4 of 4 corroborated by 2+ sources
EDA(6), TSPEAR(4), WNT10A(8), EDARADD(6)
0.057 0.125 1.47e-6 8.40e-6 ✓ sig. —
Ductal carcinoma of breast Lymphatic metastasis
3 genes
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SOD2(1), ERBB2(1), CD274(1)
0.075 0.250 1.45e-6 8.28e-6 ✓ sig. —
Neuropathy Visual system disorder
2 genes
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EFEMP1(1), PNPT1(1)
0.100 1.000 1.44e-6 8.23e-6 ✓ sig. Cluster 146 →
Amyloid polyneuropathy Amyloidosis
2 genes
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2 of 2 corroborated by 2+ sources
APOA1(2), TTR(6)
0.100 1.000 1.44e-6 8.23e-6 ✓ sig. —
Aortic disease Brittle cornea syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PRDM5(7), ZNF469(7)
0.100 1.000 1.44e-6 8.23e-6 ✓ sig. —
B-lymphoblastic leukemia/lymphoma Vulvar lichen sclerosus
2 genes
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2 of 2 corroborated by 2+ sources
TP53(3), CDKN2A(3)
0.100 1.000 1.44e-6 8.23e-6 ✓ sig. Cluster 3 →
Allergic contact dermatitis Contact dermatitis
6 genes
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6 of 6 corroborated by 2+ sources
BCL2(2), TLR4(2), CYP1A1(2), IL18(2), CASP8(2), CCR1(2)
0.042 0.082 1.43e-6 8.18e-6 ✓ sig. Cluster 16 →
Turner syndrome Ureteral calculi
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), SOD1(2)
0.182 0.500 1.42e-6 8.09e-6 ✓ sig. Cluster 285 →
Cavernous malformations of cns Developmental venous anomaly
2 genes
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PDCD10(1), CCM2(1)
0.182 0.500 1.42e-6 8.09e-6 ✓ sig. Cluster 308 →
Autoimmune polyendocrine syndrome Obstructive asthma
2 genes
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2 of 2 corroborated by 2+ sources
0.182 0.500 1.42e-6 8.09e-6 ✓ sig. Cluster 1 →
Esophageal achalasia Obstructive asthma
2 genes
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2 of 2 corroborated by 2+ sources
0.182 0.500 1.42e-6 8.09e-6 ✓ sig. Cluster 1 →
Obstructive asthma Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.182 0.500 1.42e-6 8.09e-6 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.