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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cerebral arteriovenous malformations Intracranial arteriovenous malformation
3 genes
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2 of 3 corroborated by 2+ sources
IL6(3), KRAS(3), ENG(1)
0.130 1.000 2.53e-9 2.19e-8 ✓ sig. —
Beta thalassemia Hemochromatosis
4 genes
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4 of 4 corroborated by 2+ sources
TFR2(6), HFE(6), TNF(2), HAMP(6)
0.125 0.286 2.54e-9 2.20e-8 ✓ sig. Cluster 135 →
Graft-versus-host disease Granulomatosis with polyangiitis
4 genes
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4 of 4 corroborated by 2+ sources
IL10(3), HLA-DPB1(3), CTLA4(3), PTPN22(2)
0.125 0.286 2.54e-9 2.20e-8 ✓ sig. Cluster 147 →
Bipolar depression Panic disorder
7 genes
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2 of 7 corroborated by 2+ sources
COMT(1), INS(2), HTR1A(1), PDE4B(2), MAOA(1), MBL2(1), TPH2(1)
0.053 0.206 2.59e-9 2.24e-8 ✓ sig. —
Androgenetic alopecia Diverticular disease
26 genes
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2 of 26 corroborated by 2+ sources
RREB1(1), ARHGAP15(2), BORCS5(1), PEX14(1), TRPS1(1), VAPA(1), LRP1(1), EFEMP1(1), PNPT1(1), BABAM2(1), BMP7(1), BTC(1) +14 more
0.041 0.104 2.60e-9 2.25e-8 ✓ sig. —
Aplastic anemia Sickle cell anemia
5 genes
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3 of 5 corroborated by 2+ sources
GSTT1(1), TNF(2), HLA-DQB1(1), CAD(2), UMPS(2)
0.089 0.179 2.65e-9 2.30e-8 ✓ sig. —
Long qt syndrome, digenic Short qt syndrome
3 genes
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2 of 3 corroborated by 2+ sources
KCNH2(5), KCNQ1(6), SCN5A(1)
0.214 0.600 2.71e-9 2.34e-8 ✓ sig. —
Aniridia Axenfeld-rieger syndrome
3 genes
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3 of 3 corroborated by 2+ sources
FOXC1(6), PAX6(4), PITX2(6)
0.231 0.500 2.76e-9 2.38e-8 ✓ sig. —
Congenital hyperinsulinism Transient neonatal diabetes mellitus
3 genes
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3 of 3 corroborated by 2+ sources
ABCC8(6), KCNJ11(5), GCK(3)
0.231 0.500 2.76e-9 2.38e-8 ✓ sig. Cluster 36 →
Eosinophilia Seasonal allergic rhinitis
10 genes
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2 of 10 corroborated by 2+ sources
EMSY(1), HLA-DQA1(3), JAZF1(1), RORA(1), SMAD3(1), CLEC16A(1), RAD50(1), TSLP(3), WDR36(1), XKR6(1)
0.049 0.100 2.76e-9 2.38e-8 ✓ sig. —
Intracranial aneurysm Oral submucous fibrosis
4 genes
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4 of 4 corroborated by 2+ sources
IL6(2), MMP9(2), MMP2(2), COL1A2(2)
0.125 0.267 2.80e-9 2.42e-8 ✓ sig. —
Colorectal adenoma Ovarian serous carcinoma
16 genes
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PDE4D(1), RTEL1(1), TERT(1), HLA-DQA1(1), HLA-DRB1(1), PREX1(1), TET2(1), TTC33(1), ATXN2(1), HLA-B(1), SMAD7(1), EIF3H(1) +4 more
0.041 0.115 2.82e-9 2.43e-8 ✓ sig. Cluster 20 →
Leukemia Myelodysplastic syndrome
6 genes
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2 of 6 corroborated by 2+ sources
IRF4(1), JAK2(2), DNMT3A(2), CFLAR(1), SPHK1(1), SMPD3(1)
0.071 0.140 2.84e-9 2.45e-8 ✓ sig. Cluster 53 →
Bouillaud’s disease Bullous pemphigoid
3 genes
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3 of 3 corroborated by 2+ sources
0.125 1.000 2.91e-9 2.51e-8 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Bullous pemphigoid
3 genes
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3 of 3 corroborated by 2+ sources
0.125 1.000 2.91e-9 2.51e-8 ✓ sig. Cluster 1 →
Periodontitis Substance abuse
23 genes
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4 of 23 corroborated by 2+ sources
ACTN2(1), AKAP6(1), CAMTA1(1), CDH13(1), DLG2(1), ERC2(1), FAM135B(1), GRIK1(1), KDM4B(1), NKAIN2(1), RBFOX1(1), ROBO2(1) +11 more
0.035 0.146 2.92e-9 2.52e-8 ✓ sig. —
Atrioventricular block Sick sinus syndrome
4 genes
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2 of 4 corroborated by 2+ sources
LMNA(3), TTN(2), SCN10A(1), CCDC141(1)
0.125 0.235 3.08e-9 2.65e-8 ✓ sig. Cluster 4 →
Erythematosquamous dermatosis Rosacea
4 genes
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HERC2(1), IRF4(1), MC1R(1), SLC45A2(1)
0.121 0.286 3.10e-9 2.67e-8 ✓ sig. —
Hemochromatosis Iron metabolism disorder
4 genes
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4 of 4 corroborated by 2+ sources
BMP2(3), CP(3), HFE(6), FTH1(6)
0.121 0.286 3.10e-9 2.67e-8 ✓ sig. Cluster 135 →
Diabetic angiopathies Uveitis
5 genes
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3 of 5 corroborated by 2+ sources
HLA-DRB1(1), SERPINF1(2), SOD2(2), TNF(1), ALB(2)
0.088 0.179 3.12e-9 2.69e-8 ✓ sig. —
Diabetic peripheral angiopathy Uveitis
5 genes
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3 of 5 corroborated by 2+ sources
HLA-DRB1(1), SERPINF1(2), SOD2(2), TNF(1), ALB(2)
0.088 0.179 3.12e-9 2.69e-8 ✓ sig. —
Epilepsy of infancy with migrating focal seizures genetic developmental and epileptic encephalopathy
4 genes
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4 of 4 corroborated by 2+ sources
SCN1A(2), SLC12A5(3), PLCB1(2), SLC25A22(2)
0.095 0.444 3.14e-9 2.70e-8 ✓ sig. —
genetic developmental and epileptic encephalopathy Malignant migrating partial seizures of infancy
4 genes
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4 of 4 corroborated by 2+ sources
SCN1A(3), SLC12A5(3), PLCB1(3), SLC25A22(3)
0.095 0.444 3.14e-9 2.70e-8 ✓ sig. —
Differentiated thyroid carcinoma Nonmedullary thyroid cancer
4 genes
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4 of 4 corroborated by 2+ sources
FOXE1(3), NRAS(3), HRAS(3), NKX2-1(2)
0.075 0.571 3.15e-9 2.70e-8 ✓ sig. —
Endometrial neoplasms Urinary bladder neoplasms
12 genes
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2 of 12 corroborated by 2+ sources
BPTF(2), ARID1A(1), ESR2(1), ESR1(1), MTHFR(1), AKT1(2), CXCL8(1), CDH1(1), MYC(1), TRPV1(1), EP300(1), CCND1(1)
0.046 0.091 3.21e-9 2.76e-8 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.