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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Colitis Necrosis
7 genes
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7 of 7 corroborated by 2+ sources
IL1B(2), TNF(2), IL6(2), IFNG(2), AHR(2), IL17A(2), NOS2(2)
0.085 0.212 1.99e-11 2.12e-10 ✓ sig. Cluster 114 →
Esophageal neoplasms Gallbladder neoplasms
7 genes
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2 of 7 corroborated by 2+ sources
TP53(1), DCC(2), EGFR(1), BCL2(1), UCHL1(1), ABCB1(2), ERBB2(1)
0.075 0.280 1.99e-11 2.12e-10 ✓ sig. —
Bullous pemphigoid Interstitial cystitis
6 genes
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2 of 6 corroborated by 2+ sources
0.103 0.261 2.03e-11 2.16e-10 ✓ sig. Cluster 1 →
Cryptophthalmos syndrome Mobius syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.211 0.571 2.04e-11 2.17e-10 ✓ sig. Cluster 48 →
Cyclocephaly Mobius syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.211 0.571 2.04e-11 2.17e-10 ✓ sig. Cluster 48 →
Anxiety disorder Panic disorder
9 genes
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2 of 9 corroborated by 2+ sources
HTR1A(1), PDE4B(1), CRH(2), ADORA2A(2), AURKB(1), BORCS6(1), IQCE(1), MANEA(1), TPH2(1)
0.052 0.265 2.07e-11 2.20e-10 ✓ sig. —
Cleft palate Congenital anomaly of limb
6 genes
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6 of 6 corroborated by 2+ sources
TP63(2), IRF6(2), TGFB2(2), FGFR2(2), CHUK(2), COL11A2(2)
0.085 0.375 2.10e-11 2.24e-10 ✓ sig. —
Macular and posterior pole degeneration Mesangiocapillary glomerulonephritis
4 genes
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4 of 4 corroborated by 2+ sources
CFI(2), C3(2), CD46(2), CFH(2)
0.222 0.500 2.13e-11 2.27e-10 ✓ sig. —
Basal ganglia disease Primary familial brain calcification
4 genes
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4 of 4 corroborated by 2+ sources
PDGFRB(4), XPR1(4), PDGFB(4), SLC20A2(3)
0.222 0.500 2.13e-11 2.27e-10 ✓ sig. Cluster 390 →
Rod-cone dystrophy Stargardt disease
6 genes
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BEST1(1), LRAT(1), RPE65(1), EYS(1), SNRNP200(1), RHO(1)
0.107 0.214 2.18e-11 2.32e-10 ✓ sig. —
Hypoglycemia Permanent neonatal diabetes mellitus
5 genes
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4 of 5 corroborated by 2+ sources
INS(6), INS-IGF2(1), ABCC8(6), KCNJ11(5), GCK(6)
0.135 0.357 2.22e-11 2.35e-10 ✓ sig. Cluster 36 →
autosomal recessive primary microcephaly Primary microcephaly
4 genes
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4 of 4 corroborated by 2+ sources
CENPE(4), ASPM(4), CDK5RAP2(4), STIL(4)
0.111 1.000 2.24e-11 2.37e-10 ✓ sig. —
Hereditary atrial fibrillation Long qt syndrome, digenic
4 genes
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4 of 4 corroborated by 2+ sources
KCNE2(2), KCNQ1(2), SCN5A(2), KCNE1(2)
0.154 0.800 2.27e-11 2.40e-10 ✓ sig. —
Obstructive airway disease Sleep apnea
9 genes
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ACE(1), NOS3(1), TNF(1), SLC6A4(1), MMP9(1), CRP(1), EDN1(1), LEPR(1), ADRB1(1)
0.064 0.184 2.36e-11 2.50e-10 ✓ sig. —
Graft-versus-host disease Graves ophthalmopathy
5 genes
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2 of 5 corroborated by 2+ sources
IL10(3), IL2(1), CTLA4(2), PTPN22(1), IL1RN(1)
0.143 0.278 2.39e-11 2.53e-10 ✓ sig. Cluster 147 →
Blindness Leber congenital amaurosis
6 genes
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4 of 6 corroborated by 2+ sources
ABCA4(1), AIPL1(6), USH2A(1), LCA5(7), RPE65(6), CEP290(6)
0.074 0.429 2.46e-11 2.61e-10 ✓ sig. —
Cardiovascular disease Preeclampsia
19 genes
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7 of 19 corroborated by 2+ sources
ACE(3), ADRA1D(1), AGT(3), MECOM(1), PREX1(1), NOS3(4), MTHFR(3), PPARG(2), FGF5(1), PRDM8(1), FTO(2), PLCE1(1) +7 more
0.037 0.194 2.48e-11 2.62e-10 ✓ sig. —
Cleft lip and cleft of alveolar process of maxilla Complete unilateral cleft lip
4 genes
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TP63(1), IRF6(1), MSX1(1), NECTIN1(1)
0.108 1.000 2.52e-11 2.66e-10 ✓ sig. —
B-cell acute lymphoblastic leukemia Thyroid disease
8 genes
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1 of 8 corroborated by 2+ sources
SPATA13(1), CCR6(1), CCL2(3), CEP43(1), TG(1), STAT4(1), ARID5B(1), RNASET2(1)
0.075 0.151 2.53e-11 2.68e-10 ✓ sig. —
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency Mitochondrial complex deficiency
5 genes
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5 of 5 corroborated by 2+ sources
SCO2(5), COA5(5), COA6(5), COX15(5), SURF1(4)
0.042 1.000 2.53e-11 2.68e-10 ✓ sig. Cluster 50 →
Cachexia Colitis
5 genes
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5 of 5 corroborated by 2+ sources
IGF1(2), TNF(2), IL6(2), PTGS2(2), GHRL(2)
0.122 0.417 2.58e-11 2.72e-10 ✓ sig. —
Autoimmune polyendocrine syndrome Oropharyngeal neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
0.500 0.750 2.63e-11 2.77e-10 ✓ sig. Cluster 1 →
Epilepsy with auditory features Lateral temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
RELN(3), DEPDC5(2), LGI1(4)
0.500 0.750 2.63e-11 2.77e-10 ✓ sig. —
Hypertyrosinemia Tyrosinemia
3 genes
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3 of 3 corroborated by 2+ sources
FAH(7), HPD(6), TAT(7)
0.500 0.750 2.63e-11 2.77e-10 ✓ sig. Cluster 247 →
Alport syndrome Alport syndrome, x-linked
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(5), COL4A3(5), COL4A4(5)
0.500 0.750 2.63e-11 2.77e-10 ✓ sig. Cluster 49 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.