Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Centronuclear myopathy Congenital myopathy
7 genes
Show details
6 of 7 corroborated by 2+ sources
ACTA1(7), RYR1(5), TTN(4), TPM3(4), CHRNA1(1), CACNA1S(4), CCDC78(6)
0.115 0.318 1.84e-13 2.36e-12 ✓ sig. Cluster 189 →
Congenital muscular dystrophy Congenital myopathy
7 genes
Show details
7 of 7 corroborated by 2+ sources
GMPPB(3), LARGE1(2), RYR1(4), LMNA(4), DYSF(3), ITGA7(3), FKRP(4)
0.115 0.318 1.84e-13 2.36e-12 ✓ sig. —
Immune system disease Immune system disorder
5 genes
Show details
5 of 5 corroborated by 2+ sources
ARG1(2), EIF2AK4(2), POMC(2), TRPM7(2), CNR2(2)
0.106 1.000 1.90e-13 2.43e-12 ✓ sig. —
Cortical development malformation Cortical dysplasia with other brain malformations
6 genes
Show details
6 of 6 corroborated by 2+ sources
TUBG1(3), DYNC1H1(3), KIF5C(3), TUBB2B(3), KIF2A(3), TUBGCP2(2)
0.154 0.353 1.96e-13 2.50e-12 ✓ sig. Cluster 176 →
Corneal dystrophy Eye disease
9 genes
Show details
1 of 9 corroborated by 2+ sources
ANTXR1(1), COL5A1(1), TCF4(6), RXRA(1), COL24A1(1), LAMB1(1), CHRNB1(1), GDPD5(1), KANK4(1)
0.076 0.281 1.99e-13 2.54e-12 ✓ sig. —
Amphetamine or sympathomimetic abuse Seizures
13 genes
Show details
13 of 13 corroborated by 2+ sources
ACHE(2), BDNF(2), NOS1(2), PDYN(2), ADORA2A(2), DRD1(2), DRD2(2), DRD3(2), FOS(2), GABRG2(2), GAD2(2), HTR1B(2) +1 more
0.063 0.169 2.02e-13 2.58e-12 ✓ sig. Cluster 13 →
Dravet syndrome Febrile convulsion
5 genes
Show details
5 of 5 corroborated by 2+ sources
GABRG2(7), SCN1A(5), SCN1B(3), SCN2A(2), SCN9A(2)
0.192 0.625 2.04e-13 2.60e-12 ✓ sig. Cluster 47 →
monogenic diabetes Neonatal diabetes mellitus
5 genes
Show details
5 of 5 corroborated by 2+ sources
INS(2), ABCC8(2), KCNJ11(2), GCK(2), PDX1(2)
0.217 0.500 2.16e-13 2.75e-12 ✓ sig. Cluster 36 →
Congenital generalized lipodystrophy Generalized lipodystrophy
4 genes
Show details
4 of 4 corroborated by 2+ sources
CAV1(5), BSCL2(4), CAVIN1(3), AGPAT2(4)
0.400 0.667 2.24e-13 2.85e-12 ✓ sig. Cluster 71 →
Focal cortical dysplasia Tuberous sclerosis complex
4 genes
Show details
2 of 4 corroborated by 2+ sources
PKD1(1), TSC2(7), TSC1(7), NTHL1(1)
0.400 0.667 2.24e-13 2.85e-12 ✓ sig. Cluster 70 →
Hodgkin lymphoma Lymphoid leukemia
9 genes
Show details
GRAMD1B(1), HLA-DQB1(1), EXOC2(1), IRF4(1), SP140(1), IRF8(1), ACOXL(1), BMF(1), MEGF11(1)
0.069 0.321 2.33e-13 2.96e-12 ✓ sig. Cluster 225 →
Anxiety disorder Cannabis abuse
15 genes
Show details
6 of 15 corroborated by 2+ sources
FOXP2(1), GABRA2(2), PDE4B(1), DRD2(3), DRD4(2), SLC6A4(3), FURIN(1), NCAM1(1), TMPRSS5(1), BTN1A1(1), METTL15(1), PLCL2(1) +3 more
0.060 0.129 2.63e-13 3.35e-12 ✓ sig. Cluster 2 →
Hyperuricemic nephropathy Tubulointerstitial kidney disease
4 genes
Show details
3 of 4 corroborated by 2+ sources
HNF1B(1), REN(3), UMOD(3), SEC61A1(5)
0.364 0.800 2.69e-13 3.42e-12 ✓ sig. Cluster 23 →
Frontal lobe epilepsy Nocturnal frontal lobe epilepsy
4 genes
Show details
4 of 4 corroborated by 2+ sources
CHRNB2(5), CRH(2), CHRNA4(5), KCNT1(5)
0.364 0.800 2.69e-13 3.42e-12 ✓ sig. Cluster 273 →
Seasonal allergic rhinitis Upper respiratory tract disorder
8 genes
Show details
SMAD3(1), IL18R1(1), IL7R(1), NFKB1(1), IL1RL1(1), IL33(1), RANBP6(1), TSLP(1)
0.071 0.400 2.81e-13 3.57e-12 ✓ sig. Cluster 137 →
Rhinitis Status epilepticus
10 genes
Show details
9 of 10 corroborated by 2+ sources
CAT(2), BDNF(2), HMOX1(2), TNF(2), PTGS2(2), IL1RN(2), ABCB1(1), CCR2(2), CCR3(2), GRIA2(2)
0.079 0.154 2.84e-13 3.60e-12 ✓ sig. —
Cystic kidney disease Nephronophthisis
7 genes
Show details
6 of 7 corroborated by 2+ sources
CC2D2A(1), RPGRIP1L(2), TMEM67(4), CEP290(2), SDCCAG8(2), ANKS6(7), INVS(7)
0.117 0.269 2.91e-13 3.69e-12 ✓ sig. Cluster 8 →
Constitutional mismatch repair deficiency Muir-torre syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
MSH2(7), MSH6(7), PMS2(7), MLH1(8)
0.286 1.000 3.05e-13 3.86e-12 ✓ sig. Cluster 166 →
Constitutional mismatch repair deficiency mismatch repair cancer syndrome 1
4 genes
Show details
4 of 4 corroborated by 2+ sources
MSH2(6), MSH6(7), PMS2(6), MLH1(6)
0.286 1.000 3.05e-13 3.86e-12 ✓ sig. Cluster 166 →
Waardenburg syndrome Waardenburg-shah syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
EDNRB(8), MITF(7), EDN3(8), SOX10(8)
0.286 1.000 3.05e-13 3.86e-12 ✓ sig. Cluster 229 →
Kidney cancer Uterine fibroid
17 genes
Show details
RTEL1(1), TERT(1), TP53(1), EXO1(1), TTC28(1), POT1(1), CDKN2C(1), STMN3(1), MLLT10(1), ATM(1), C11orf65(1), RBPMS(1) +5 more
0.046 0.210 3.08e-13 3.90e-12 ✓ sig. —
Colonic neoplasms Renal cell carcinoma
18 genes
Show details
1 of 18 corroborated by 2+ sources
HNF1B(1), TP53(1), TET2(2), VEGFA(1), SOD2(1), RELA(1), PTGS2(1), DNMT1(1), ALOX5(1), TNFSF10(1), ERBB2(1), HSPB1(1) +6 more
0.055 0.130 3.11e-13 3.93e-12 ✓ sig. Cluster 5 →
Amyotrophic lateral sclerosis Schizophrenia
108 genes
Show details
66 of 108 corroborated by 2+ sources
TP53(2), GFAP(2), ALCAM(1), ALDH1A2(2), ANK3(2), APOE(2), CLU(2), CTNND2(2), DAO(5), DISC1(4), DOCK1(1), ERBB4(7) +96 more
0.039 0.325 3.15e-13 3.98e-12 ✓ sig. —
Colobomatous microphthalmia Nanophthalmos
5 genes
Show details
SOX2(1), SIX6(1), OTX2(1), RAX(1), ALDH1A3(1)
0.217 0.417 3.29e-13 4.15e-12 ✓ sig. Cluster 56 →
Inflammatory skin disease Sclerosing cholangitis
15 genes
Show details
IFIH1(1), EMSY(1), TNIP1(1), ERAP1(1), FAP(1), GRHL3(1), IFNLR1(1), IL23R(1), KCNH7(1), LCE3A(1), LCE3B(1), NOS2(1) +3 more
0.051 0.197 3.30e-13 4.16e-12 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.