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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Alzheimer disease Parkinson disease
153 genes
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52 of 153 corroborated by 2+ sources
KANSL1(1), RERE(1), INS(2), WWOX(2), SCARB2(1), ADARB2(3), AGAP1(1), ALCAM(1), ALDH1A2(3), APOE(6), ARHGEF2(1), BCKDK(1) +141 more
0.059 0.289 1.37e-18 2.43e-17 ✓ sig. Cluster 2 →
Frontotemporal dementia with motor neuron disease Frontotemporal dementia with or without amyotrophic lateral sclerosis
6 genes
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6 of 6 corroborated by 2+ sources
VCP(7), GRN(2), SQSTM1(7), C9orf72(6), CHCHD10(7), TBK1(7)
0.400 0.750 1.40e-18 2.47e-17 ✓ sig. Cluster 102 →
Thrombocytopenia Thrombosis
14 genes
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14 of 14 corroborated by 2+ sources
FGA(2), EPO(2), TNF(2), PLAT(2), FCGR2A(2), SERPINC1(2), PF4(2), PROS1(2), P2RY12(2), THBD(2), VWF(2), GP1BA(2) +2 more
0.082 0.311 1.61e-18 2.84e-17 ✓ sig. —
Brain infarction Lewy body disease
12 genes
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APOE(1), CDKAL1(1), KAZN(1), PTPRD(1), SGK1(1), HS3ST4(1), ATP10A(1), POLD3(1), ABTB2(1), KCNB2(1), RAG1(1), SLC29A4(1)
0.100 0.333 1.64e-18 2.90e-17 ✓ sig. —
Glioma Obesity
130 genes
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23 of 130 corroborated by 2+ sources
RAI1(3), AKAP6(1), ARHGAP24(1), ARHGEF28(1), C6orf118(1), CARD11(1), CCDC33(1), CDH4(1), CDKAL1(2), CSMD1(1), CTNNA3(1), DCC(1) +118 more
0.071 0.172 1.67e-18 2.95e-17 ✓ sig. —
Age-related macular degeneration Macular and posterior pole degeneration
9 genes
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6 of 9 corroborated by 2+ sources
CFI(4), C3(3), CETP(1), CFH(3), RDH5(1), ARMS2(3), C9(3), SKIC2(1), HTRA1(2)
0.102 0.692 1.73e-18 3.04e-17 ✓ sig. Cluster 187 →
autosomal dominant polycystic kidney disease Polycystic kidney disease
7 genes
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7 of 7 corroborated by 2+ sources
ALG8(3), DNAJB11(7), PKD1(8), PKD2(8), IFT140(5), ALG5(7), NEK8(7)
0.143 1.000 1.81e-18 3.19e-17 ✓ sig. —
Cushing syndrome Hyperaldosteronism
8 genes
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8 of 8 corroborated by 2+ sources
CYP11B2(3), CACNA1D(2), CACNA1H(5), KCNJ5(6), ATP2B3(2), ATP1A1(2), CLCN2(6), CYP11B1(4)
0.211 0.381 1.89e-18 3.33e-17 ✓ sig. —
Bardet-biedl syndrome Joubert syndrome
12 genes
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7 of 12 corroborated by 2+ sources
KIF7(1), NPHP4(1), RPGRIP1(1), RPGRIP1L(5), NPHP3(1), TMEM67(6), NPHP1(7), CEP290(6), TTC21B(2), IFT74(6), MKS1(7), RLIG1(1)
0.113 0.207 2.37e-18 4.17e-17 ✓ sig. Cluster 8 →
Cone dystrophy Night blindness, congenital stationary
9 genes
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5 of 9 corroborated by 2+ sources
ABCA4(1), CACNA1F(3), PDE6B(3), USH2A(1), GUCY2D(4), CABP4(1), RHO(3), RPGR(1), SAG(2)
0.164 0.360 2.42e-18 4.25e-17 ✓ sig. —
Gallstones Hyperlipidemia
19 genes
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5 of 19 corroborated by 2+ sources
ABCA1(1), ABCG8(3), APOE(3), FADS1(1), FADS2(1), MLXIPL(1), VEGFA(1), HMGCR(2), ABO(1), ZPR1(1), GCKR(1), ABCB1(2) +7 more
0.077 0.153 2.75e-18 4.83e-17 ✓ sig. —
Breast neoplasms Renal cell carcinoma
32 genes
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APRT(1), CAT(1), PTEN(1), TP53(1), PAK1(1), ACHE(1), BCHE(1), GSTP1(1), SOD2(1), IL6(1), RELA(1), PTGS2(1) +20 more
0.051 0.230 2.81e-18 4.93e-17 ✓ sig. Cluster 5 →
Female infertility Oocyte maturation defect
11 genes
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11 of 11 corroborated by 2+ sources
TRIP13(4), PANX1(4), ZFP36L2(5), BTG4(4), PATL2(5), TLE6(4), TUBB8(6), WEE2(4), ZP1(6), ZP2(6), ZP3(6)
0.093 0.440 2.86e-18 5.01e-17 ✓ sig. —
Disseminated superficial actinic porokeratosis Porokeratosis
5 genes
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5 of 5 corroborated by 2+ sources
MVK(6), FDPS(7), SART3(2), MVD(6), SLC17A9(6)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. —
Megacystis microcolon intestinal hypoperistalsis syndrome Visceral myopathy
5 genes
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5 of 5 corroborated by 2+ sources
MYH11(5), MYLK(6), LMOD1(5), ACTG2(6), MYL9(4)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. Cluster 220 →
Childhood ataxia with cns hypomyelination Congenital or early infantile cach syndrome
5 genes
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5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(2), EIF2B2(2), EIF2B4(2), EIF2B5(2)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. Cluster 170 →
Childhood ataxia with cns hypomyelination Cree leukoencephalopathy
5 genes
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5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(2), EIF2B2(2), EIF2B4(2), EIF2B5(2)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. Cluster 170 →
Childhood ataxia with cns hypomyelination Vanishing white matter disease
5 genes
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5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(3), EIF2B2(3), EIF2B4(3), EIF2B5(3)
0.625 1.000 2.91e-18 5.08e-17 ✓ sig. Cluster 170 →
Macular degeneration Retinopathy
12 genes
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7 of 12 corroborated by 2+ sources
ABCA4(3), CFI(3), C2(3), C3(3), CD46(1), PDGFB(1), RPL3(1), CETP(1), CFH(3), RDH5(1), ARMS2(3), RPGR(3)
0.111 0.231 2.94e-18 5.12e-17 ✓ sig. Cluster 187 →
Congenital muscular dystrophy due to dystroglycanopathy Walker-warburg syndrome
6 genes
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6 of 6 corroborated by 2+ sources
GMPPB(2), LARGE1(3), CRPPA(3), POMGNT1(3), FKRP(3), B3GALNT2(3)
0.333 0.857 3.03e-18 5.27e-17 ✓ sig. Cluster 14 →
Dentinogenesis imperfecta Hypomaturation amelogenesis imperfecta
6 genes
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6 of 6 corroborated by 2+ sources
SLC24A4(2), AMELX(2), KLK4(2), MMP20(2), ODAPH(2), WDR72(2)
0.333 0.857 3.03e-18 5.27e-17 ✓ sig. Cluster 366 →
Platelet disorder Platelet-type bleeding disorder
7 genes
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7 of 7 corroborated by 2+ sources
ITGB3(5), TPM4(4), TBXA2R(5), FLI1(5), GP6(7), EPHB2(5), CD36(3)
0.259 0.538 3.26e-18 5.66e-17 ✓ sig. Cluster 33 →
Depression Psychotic disorders
24 genes
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5 of 24 corroborated by 2+ sources
CD34(1), NPAS3(1), PCNT(1), BDNF(2), MAOA(1), AVP(2), HTR1B(2), TGFB1(1), CACNA1C(1), CRHR1(1), CSF2RB(1), NR3C1(2) +12 more
0.063 0.192 3.66e-18 6.36e-17 ✓ sig. —
Brain ischemia Hypersensitivity
13 genes
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13 of 13 corroborated by 2+ sources
IL1B(2), MTHFR(2), TNF(2), IL6(2), ALB(2), CCL2(2), IL17A(2), TNFRSF1A(2), TNFRSF1B(2), IL18(2), CCL11(2), CCL3(2) +1 more
0.102 0.186 4.23e-18 7.35e-17 ✓ sig. —
Cholecystolithiasis Intrahepatic cholestasis of pregnancy
11 genes
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3 of 11 corroborated by 2+ sources
SERPINA1(1), ABCG8(2), SHROOM3(1), GCKR(1), ABCB1(1), ATP8B1(3), HNF4A(1), CYP7A1(1), ABCB4(3), UBXN2B(1), SULT2A1(1)
0.072 0.550 4.33e-18 7.51e-17 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.