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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Digitotalar dysmorphism Distal arthrogryposis
6 genes
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6 of 6 corroborated by 2+ sources
MYH3(5), TPM2(6), NALCN(2), TNNI2(5), TNNT3(5), MYBPC1(5)
0.353 1.000 4.33e-19 7.82e-18 ✓ sig. Cluster 202 →
Ductus arteriosus, patent Patent ductus arteriosus
6 genes
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6 of 6 corroborated by 2+ sources
AGTR1(2), PRDM6(4), TFAP2B(5), NPPA(2), TRAF1(2), PTGIS(2)
0.353 1.000 4.33e-19 7.82e-18 ✓ sig. —
Congenital fiber type disproportion myopathy Congenital myopathy
8 genes
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8 of 8 corroborated by 2+ sources
ACTA1(7), RYR1(4), MYH7(5), TPM2(6), TPM3(6), ITGA7(3), SELENON(5), HACD1(6)
0.163 0.727 4.52e-19 8.15e-18 ✓ sig. Cluster 189 →
Major depressive disorder Parkinson disease
142 genes
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65 of 142 corroborated by 2+ sources
CYP17A1(1), KANSL1(1), RERE(1), WWOX(1), GFAP(2), ATP1A3(2), ADARB2(3), ALCAM(1), APOE(1), CACNA2D3(1), CAMK1D(1), CNTNAP2(3) +130 more
0.060 0.268 5.08e-19 9.17e-18 ✓ sig. Cluster 2 →
Breast cancer Gout
128 genes
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3 of 128 corroborated by 2+ sources
SIN3A(1), JMJD1C(1), RREB1(1), NOTCH2(1), PIK3R1(1), CHEK2(1), TPCN2(1), ADGRL2(1), BNC2(1), CADM2(1), CDKAL1(1), CNTNAP2(1) +116 more
0.073 0.156 5.99e-19 1.08e-17 ✓ sig. —
Aortic dissection Congenital aneurysm of ascending aorta
7 genes
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2 of 7 corroborated by 2+ sources
FBN1(1), SMAD3(2), FOXE3(1), COL3A1(1), TGFBR2(2), LOX(1), SRFBP1(1)
0.292 0.583 6.18e-19 1.11e-17 ✓ sig. —
Hypotrichosis Woolly hair
6 genes
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5 of 6 corroborated by 2+ sources
KRT25(6), KRT71(6), KRT74(5), RB1(1), LIPH(5), LPAR6(6)
0.333 1.000 6.69e-19 1.20e-17 ✓ sig. —
C1 esterase inhibitor deficiency Complement component deficiency
6 genes
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6 of 6 corroborated by 2+ sources
C2(5), SERPING1(5), C4B(5), C8B(4), C9(4), C8A(4)
0.333 1.000 6.69e-19 1.20e-17 ✓ sig. Cluster 383 →
Aplasia of the vermis Nephronophthisis
11 genes
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7 of 11 corroborated by 2+ sources
CPLANE1(1), CC2D2A(1), RPGRIP1L(2), NPHP3(6), TMEM67(4), NPHP1(6), CEP290(2), IFT172(2), TTC21B(5), AHI1(1), RLIG1(1)
0.131 0.275 7.13e-19 1.28e-17 ✓ sig. Cluster 8 →
Nephrolithiasis Ureterolithiasis
9 genes
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1 of 9 corroborated by 2+ sources
ALPL(1), BCAS3(1), PDILT(1), ABCG2(1), RGS14(1), BCAS1(1), CYP24A1(2), KLK15(1), RSPH14(1)
0.074 0.900 7.77e-19 1.39e-17 ✓ sig. Cluster 178 →
Biliary cirrhosis Systemic sclerosis
19 genes
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8 of 19 corroborated by 2+ sources
DDX6(1), DGKQ(1), ELMO1(1), HLA-DQA1(2), HLA-DRA(1), HLA-DQB1(2), ATG5(1), HLA-DPB1(1), CCR6(2), IL12RB2(1), IRF5(2), NFKB1(2) +7 more
0.080 0.148 7.77e-19 1.39e-17 ✓ sig. —
Intracellular cobalamin metabolism disorder Methylmalonic acidemia
7 genes
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7 of 7 corroborated by 2+ sources
ZNF143(3), MMACHC(3), MMADHC(6), ABCD4(7), HCFC1(5), LMBRD1(7), THAP11(5)
0.233 0.778 7.84e-19 1.40e-17 ✓ sig. Cluster 246 →
Anorexia nervosa Cannabis abuse
23 genes
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2 of 23 corroborated by 2+ sources
ABT1(1), BANK1(1), CTNND1(1), EPHX2(1), FOXP1(1), PDE4B(1), PTPRF(1), SEMA3F(1), SEMA6D(1), SLC39A8(1), TCF20(1), TENM2(1) +11 more
0.067 0.198 8.17e-19 1.46e-17 ✓ sig. —
Color vision deficiency Dementia
97 genes
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DMRT1(1), AHCYL2(1), ARHGAP24(1), ASB3(1), AUTS2(1), CAMK1D(1), CCDC171(1), CCDC33(1), CD2AP(1), CDH4(1), CELF4(1), CLYBL(1) +85 more
0.066 0.164 8.19e-19 1.47e-17 ✓ sig. Cluster 2 →
Heterotaxy syndrome Situs ambiguus
8 genes
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7 of 8 corroborated by 2+ sources
PKD1L1(4), CIROP(3), CERS1(1), GDF1(2), DAND5(3), MMP21(4), CFAP53(4), NODAL(5)
0.222 0.381 8.23e-19 1.47e-17 ✓ sig. Cluster 46 →
Digitotalar dysmorphism Sheldon-hall syndrome
5 genes
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5 of 5 corroborated by 2+ sources
MYH3(2), TPM2(3), NALCN(2), TNNI2(3), TNNT3(3)
0.714 1.000 8.32e-19 1.49e-17 ✓ sig. Cluster 202 →
C3 glomerulonephritis Hemolytic uremic syndrome
7 genes
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7 of 7 corroborated by 2+ sources
CFHR1(5), CFI(6), C3(6), CFB(6), CFH(6), CFHR5(6), CFHR3(4)
0.200 0.875 8.39e-19 1.50e-17 ✓ sig. Cluster 359 →
Gallstones Intrahepatic cholestasis of pregnancy
11 genes
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3 of 11 corroborated by 2+ sources
SERPINA1(1), ABCG8(2), SHROOM3(1), GCKR(1), ABCB1(1), ATP8B1(3), HNF4A(1), CYP7A1(1), ABCB4(3), UBXN2B(1), SULT2A1(1)
0.082 0.550 9.28e-19 1.65e-17 ✓ sig. —
Dystonia Torsion dystonia
7 genes
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7 of 7 corroborated by 2+ sources
THAP1(6), EIF2AK2(4), TOR1A(3), TUBB4A(5), CIZ1(3), HPCA(5), SHQ1(3)
0.156 1.000 9.42e-19 1.68e-17 ✓ sig. Cluster 167 →
Ichthyosis Lamellar ichthyosis
7 genes
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5 of 7 corroborated by 2+ sources
TGM1(2), ABCA12(3), ALOX12B(3), ALOXE3(3), CYP4F22(3), PNPLA1(1), CERS3(1)
0.292 0.500 9.62e-19 1.71e-17 ✓ sig. Cluster 233 →
Junctional epidermolysis bullosa Other epidermolysis bullosa
6 genes
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6 of 6 corroborated by 2+ sources
PLEC(3), COL17A1(7), LAMB3(6), LAMC2(6), ITGB4(6), ITGA6(6)
0.316 1.000 1.00e-18 1.78e-17 ✓ sig. —
Craniodiaphyseal dysplasia Short rib dysplasia-polydactyly syndrome
7 genes
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6 of 7 corroborated by 2+ sources
IFT43(5), IFT122(7), IFT140(3), IFT52(3), WDR19(6), WDR35(6), CILK1(1)
0.250 0.700 1.02e-18 1.81e-17 ✓ sig. Cluster 22 →
Psoriatic arthritis Sarcoidosis
17 genes
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6 of 17 corroborated by 2+ sources
HLA-C(2), HLA-DQA1(1), TNXB(1), TAP2(1), TNF(2), HLA-DQB1(2), C1orf141(1), HLA-B(2), IL23R(2), TYK2(1), NOTCH4(1), CCR2(1) +5 more
0.077 0.233 1.19e-18 2.12e-17 ✓ sig. —
Hypersensitivity Uveitis
11 genes
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11 of 11 corroborated by 2+ sources
HLA-DRB1(2), IL10(2), IL1B(2), TNF(2), IL6(2), ALB(2), TGFB1(2), HLA-B(3), TNFRSF1A(2), CCR2(2), IL13(2)
0.118 0.333 1.35e-18 2.39e-17 ✓ sig. Cluster 16 →
Thromboembolism Thrombosis
8 genes
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PLAU(1), F2(1), PLAT(1), F5(1), GAS6(1), PROC(1), PROS1(1), MERTK(1)
0.160 0.667 1.35e-18 2.40e-17 ✓ sig. Cluster 55 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.