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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Head and neck neoplasms Mucositis
3 genes
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1 of 3 corroborated by 2+ sources
IL1B(2), CSF3(1), TGFA(1)
0.057 0.375 1.48e-6 8.42e-6 ✓ sig. —
Interstitial lung disease Pulmonary surfactant metabolism dysfunction
3 genes
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2 of 3 corroborated by 2+ sources
BMP1(1), SFTPC(6), ABCA3(7)
0.043 0.500 1.49e-6 8.49e-6 ✓ sig. —
Hemorrhage Portal hypertension
3 genes
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3 of 3 corroborated by 2+ sources
REN(2), VEGFA(2), EPHA7(2)
0.081 0.200 1.50e-6 8.52e-6 ✓ sig. —
Dry eye syndrome Glomerulonephritis
6 genes
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2 of 6 corroborated by 2+ sources
NRXN1(1), THSD7A(1), IL1B(2), IL6(2), FRMD4A(1), DNAJB6(1)
0.040 0.105 1.50e-6 8.52e-6 ✓ sig. —
Essential tremor Movement disorder
6 genes
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4 of 6 corroborated by 2+ sources
CNTNAP5(1), GSTP1(2), IGF1(3), DRD3(2), DPP6(1), GNAO1(3)
0.040 0.105 1.50e-6 8.52e-6 ✓ sig. Cluster 13 →
Aortic dissection Upper respiratory tract disorder
3 genes
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3 of 3 corroborated by 2+ sources
SMAD3(3), IL18R1(2), IL1RL1(2)
0.083 0.167 1.51e-6 8.60e-6 ✓ sig. —
Endometriosis Pelvic organ prolapse
15 genes
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5 of 15 corroborated by 2+ sources
WT1(1), ABCC9(3), CAMK1D(1), FOXP2(1), NAALADL2(1), NRP1(3), PTPRD(1), SBF2(1), BCL2(1), DPP6(1), EYA1(1), DUSP1(3) +3 more
0.030 0.108 1.55e-6 8.80e-6 ✓ sig. —
Diabetic eye disease Hyperuricemia
5 genes
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2 of 5 corroborated by 2+ sources
RREB1(1), APOE(2), TGFB1(3), GCKR(1), KCNQ1(1)
0.046 0.104 1.58e-6 8.98e-6 ✓ sig. —
Focal glomerulosclerosis Preeclampsia
6 genes
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6 of 6 corroborated by 2+ sources
ACTN4(2), AGT(2), SERPINE1(2), TRPC6(2), PLCE1(2), EDN1(2)
0.040 0.105 1.59e-6 9.04e-6 ✓ sig. —
Chorioretinopathy with microcephaly Optic atrophy
3 genes
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3 of 3 corroborated by 2+ sources
TUBGCP6(2), PLK4(2), TUBGCP4(2)
0.016 1.000 1.60e-6 9.09e-6 ✓ sig. —
Benign recurrent intrahepatic cholestasis Intrahepatic cholestasis of pregnancy
2 genes
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2 of 2 corroborated by 2+ sources
ATP8B1(3), ABCB11(3)
0.095 1.000 1.60e-6 9.10e-6 ✓ sig. Cluster 319 →
Glanzmann thrombasthenia Platelet-type bleeding disorder
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(8), ITGA2B(8)
0.095 1.000 1.60e-6 9.10e-6 ✓ sig. Cluster 33 →
Canavan disease Fraser syndrome
2 genes
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1 of 2 corroborated by 2+ sources
ASPA(7), SPATA22(1)
0.095 1.000 1.60e-6 9.10e-6 ✓ sig. Cluster 242 →
congenital heart disease with heterotaxy syndrome Situs inversus
2 genes
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2 of 2 corroborated by 2+ sources
ZIC3(2), NODAL(3)
0.095 1.000 1.60e-6 9.10e-6 ✓ sig. Cluster 46 →
Hyperplasia Papilloma
3 genes
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PTGS2(1), TGFB1(1), CCND1(1)
0.073 0.250 1.61e-6 9.11e-6 ✓ sig. —
Latent autoimmune diabetes in adults Selective iga deficiency disease
3 genes
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HLA-DQA1(1), RBM17(1), PFKFB3(1)
0.073 0.250 1.61e-6 9.11e-6 ✓ sig. —
Neuronal ceroid lipofuscinosis Trigeminal neuralgia
3 genes
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3 of 3 corroborated by 2+ sources
GFAP(2), MAPK1(2), MAPK3(2)
0.073 0.250 1.61e-6 9.11e-6 ✓ sig. —
Congenital impairment of spermatozoa motility Male infertility spermatogenesis disorder
3 genes
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ARMC2(1), TTC29(1), DNAH17(1)
0.081 0.188 1.61e-6 9.13e-6 ✓ sig. Cluster 31 →
Juvenile arthritis Lung neoplasms
12 genes
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STAT3(1), FOS(1), NRG1(1), EGR1(1), MAPK1(1), KRAS(1), DAPK1(1), FOSL2(1), FOSB(1), JUN(1), KCNJ15(1), STIM1(1)
0.032 0.092 1.61e-6 9.15e-6 ✓ sig. —
Dermatologic disorder Juvenile arthritis
7 genes
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7 of 7 corroborated by 2+ sources
IL1RN(2), ALOX12(2), CD83(2), NR4A2(2), TNFAIP6(2), TNIK(2), UBE2E1(2)
0.036 0.103 1.64e-6 9.32e-6 ✓ sig. —
Brain neoplasms Tongue neoplasms
3 genes
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TERT(1), SOD2(1), HRAS(1)
0.065 0.300 1.64e-6 9.32e-6 ✓ sig. —
Hyperkinesia Lewy body disease
5 genes
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5 of 5 corroborated by 2+ sources
NTRK2(2), NGF(2), NTS(3), TH(2), SNCG(2)
0.040 0.152 1.66e-6 9.43e-6 ✓ sig. —
Lipoma Venous hypertension
2 genes
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SLC19A2(1), F5(1)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 37 →
Bile acid malabsorption Diabetes complications
2 genes
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2 of 2 corroborated by 2+ sources
SLC10A2(5), SLC51B(4)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 351 →
Congenital respiratory system anomaly familial thoracic aortic aneurysm and aortic dissection
2 genes
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2 of 2 corroborated by 2+ sources
TGFB2(2), TGFB3(2)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.