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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Digestive system disease Diverticulitis
6 genes
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ARHGAP15(1), CCDC190(1), COLQ(1), SLC35F3(1), ABO(1), CALCB(1)
0.052 0.214 1.40e-8 1.11e-7 ✓ sig. —
Growth hormone deficiency Hypogonadism
6 genes
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4 of 6 corroborated by 2+ sources
IL17RD(1), TACR3(3), TAC3(2), GNRH1(2), KISS1R(1), GNRHR(2)
0.057 0.176 1.43e-8 1.13e-7 ✓ sig. Cluster 54 →
Frontotemporal dementia Frontotemporal dementia with motor neuron disease
4 genes
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4 of 4 corroborated by 2+ sources
GRN(3), C9orf72(4), FUS(2), TARDBP(3)
0.062 0.500 1.44e-8 1.14e-7 ✓ sig. Cluster 102 →
Berylliosis Urticaria
4 genes
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1 of 4 corroborated by 2+ sources
HLA-DRB1(1), TNF(1), TGFB1(1), HLA-DPB1(3)
0.075 0.400 1.44e-8 1.14e-7 ✓ sig. —
Blood coagulation disorder Vascular disease
5 genes
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3 of 5 corroborated by 2+ sources
MTHFR(2), ABO(1), SLC19A2(1), F5(3), VKORC1(2)
0.069 0.208 1.46e-8 1.16e-7 ✓ sig. —
Cystic kidney disease Polycystic kidney disease
5 genes
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2 of 5 corroborated by 2+ sources
CC2D2A(1), PKD1(8), CEP290(1), MKS1(1), ANKS6(2)
0.071 0.192 1.49e-8 1.18e-7 ✓ sig. —
Penile disease Urinary system disease
3 genes
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SLC9A9(1), LRRC75A(1), ZNF287(1)
0.158 0.500 1.49e-8 1.18e-7 ✓ sig. Cluster 122 →
Breast implant-associated anaplastic large cell lymphoma Hereditary breast and ovarian cancer syndrome
3 genes
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2 of 3 corroborated by 2+ sources
TP53(1), BRCA2(4), BRCA1(4)
0.158 0.500 1.49e-8 1.18e-7 ✓ sig. —
46,xx ovotesticular disorder of sex development 46,xy gonadal dysgenesis
3 genes
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1 of 3 corroborated by 2+ sources
NR5A1(2), SOX9(1), SRY(1)
0.158 0.500 1.49e-8 1.18e-7 ✓ sig. Cluster 38 →
Cole-carpenter syndrome Osteogenesis imperfecta
3 genes
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3 of 3 corroborated by 2+ sources
CRTAP(7), P4HB(6), SEC24D(6)
0.075 1.000 1.50e-8 1.19e-7 ✓ sig. Cluster 68 →
Bruck syndrome Osteogenesis imperfecta
3 genes
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3 of 3 corroborated by 2+ sources
PLOD2(6), FKBP10(6), COL1A2(7)
0.075 1.000 1.50e-8 1.19e-7 ✓ sig. —
Double outlet right ventricle Transposition of the great arteries
3 genes
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1 of 3 corroborated by 2+ sources
CFC1(1), CERS1(1), GDF1(2)
0.176 0.375 1.52e-8 1.20e-7 ✓ sig. Cluster 113 →
Lamellar cataract Posterior polar cataract
3 genes
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3 of 3 corroborated by 2+ sources
CRYAB(2), MIP(3), CRYBA1(2)
0.176 0.375 1.52e-8 1.20e-7 ✓ sig. Cluster 43 →
Cone dystrophy Congenital stationary night blindness
4 genes
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3 of 4 corroborated by 2+ sources
CACNA1F(2), PDE6B(4), CABP4(1), RHO(4)
0.085 0.333 1.54e-8 1.21e-7 ✓ sig. —
Dermatitis Uveitis
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DRB1(2), TNF(1), HLA-B(3), HLA-A(2), IL13(2)
0.075 0.152 1.57e-8 1.24e-7 ✓ sig. Cluster 16 →
Diabetic foot Neuropathy
3 genes
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LNX1(1), TRDN(1), UNC5D(1)
0.136 0.600 1.59e-8 1.25e-7 ✓ sig. —
Amelogenesis imperfecta Junctional epidermolysis bullosa
4 genes
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4 of 4 corroborated by 2+ sources
COL7A1(4), COL17A1(7), LAMB3(6), LAMC2(6)
0.100 0.222 1.63e-8 1.28e-7 ✓ sig. —
Diabetes mellitus ketosis prone Maturity-onset diabetes of the young
3 genes
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3 of 3 corroborated by 2+ sources
INS(2), PAX4(3), HNF1A(2)
0.167 0.429 1.64e-8 1.29e-7 ✓ sig. —
Kawasaki disease Sjogren syndrome
7 genes
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4 of 7 corroborated by 2+ sources
TNF(1), HLA-DQB1(2), FCGR2A(3), LTA(2), BLK(3), CCR5(1), TSBP1(1)
0.054 0.109 1.65e-8 1.30e-7 ✓ sig. Cluster 25 →
Hypertrophy Urethral obstruction
5 genes
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AGT(1), COL3A1(1), FN1(1), NPPA(1), EDN1(1)
0.070 0.192 1.66e-8 1.30e-7 ✓ sig. —
Sepsis Stevens-johnson syndrome
6 genes
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5 of 6 corroborated by 2+ sources
CSF3(2), IFNA2(1), IFNG(2), NOS2(2), MIF(2), LBP(2)
0.056 0.176 1.67e-8 1.31e-7 ✓ sig. —
Brain injuries Pancreatitis
7 genes
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7 of 7 corroborated by 2+ sources
MPO(2), PARP1(2), PTGS2(2), ALB(2), CCL2(2), IL1RN(2), PPP3CA(2)
0.053 0.123 1.68e-8 1.32e-7 ✓ sig. —
Cerebroretinal microangiopathy with calcifications and cysts Dyskeratosis congenita
3 genes
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2 of 3 corroborated by 2+ sources
POT1(4), PFAS(1), CTC1(7)
0.107 0.750 1.71e-8 1.34e-7 ✓ sig. —
Cleft eyelid Congenital ocular coloboma
3 genes
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PAX6(1), FZD5(1), SALL2(1)
0.107 0.750 1.71e-8 1.34e-7 ✓ sig. Cluster 272 →
Blindness Rod-cone dystrophy
4 genes
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1 of 4 corroborated by 2+ sources
USH2A(1), RPE65(2), CEP290(1), RHO(1)
0.091 0.286 1.72e-8 1.35e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.