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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Microcephaly Primary microcephaly
28 genes
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27 of 28 corroborated by 2+ sources
LMNB1(5), CENPE(7), ZNF335(3), DPP6(2), CDK6(6), ASPM(7), CDK5RAP2(7), MCPH1(8), CIT(6), WDR62(8), CEP135(6), ANGPT2(1) +16 more
0.246 0.800 3.80e-56 2.18e-54 ✓ sig. Cluster 101 →
Insomnia Neurotic disorder
139 genes
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SOX5(1), PAFAH1B1(1), SPI1(1), AGBL1(1), ARHGAP15(1), ARHGEF10L(1), AS3MT(1), B3GALT1(1), BNC2(1), CADM2(1), CAMTA1(1), CSMD1(1) +127 more
0.101 0.320 3.56e-56 2.04e-54 ✓ sig. Cluster 2 →
Cerebellar ataxia Spinocerebellar ataxia
38 genes
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32 of 38 corroborated by 2+ sources
WWOX(5), CACNA1A(6), CACNA1G(5), PEX6(2), PRDX3(4), SETX(6), ESR1(1), PDYN(6), ITPR1(7), SYT14(5), SYNE1(3), VPS13D(5) +26 more
0.210 0.365 2.79e-56 1.61e-54 ✓ sig. Cluster 79 →
Crohn disease Eczema
105 genes
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15 of 105 corroborated by 2+ sources
CEBPA(1), IFIH1(1), BLTP1(1), ANKRD55(1), CCR7(3), CDC42SE2(1), CDH13(1), CSMD1(1), ELMO1(1), EMSY(1), ERBB3(1), ETS1(1) +93 more
0.110 0.288 2.04e-56 1.18e-54 ✓ sig. —
Aneurysm Aortic aneurysm
24 genes
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5 of 24 corroborated by 2+ sources
FBN1(3), APOE(1), CSMD1(1), KCNH5(1), NCKAP5(1), LRP1(1), ZNF335(1), SMAD3(5), ADAMTS8(1), CAST(1), CDKN1A(1), CELSR2(1) +12 more
0.364 0.889 5.64e-57 3.27e-55 ✓ sig. Cluster 12 →
Intellectual developmental disorder Intellectual disability
57 genes
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35 of 57 corroborated by 2+ sources
FOXG1(2), HDAC4(2), ANK3(5), AP4M1(3), CACNA1G(3), CRBN(5), GPT2(1), GRIN2B(4), HERC2(3), KCNN2(1), KDM5B(5), NOVA2(1) +45 more
0.069 0.750 2.57e-57 1.50e-55 ✓ sig. Cluster 6 →
Congenital brain malformation Congenital hypoplasia of part of brain
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.944 1.000 2.33e-57 1.36e-55 ✓ sig. Cluster 110 →
Congenital brain malformation Microgyria
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.944 1.000 2.33e-57 1.36e-55 ✓ sig. Cluster 110 →
Congenital hypoplasia of part of brain Microgyria
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.944 1.000 2.33e-57 1.36e-55 ✓ sig. Cluster 110 →
Arrhythmogenic right ventricular cardiomyopathy Hypertrophic cardiomyopathy
38 genes
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31 of 38 corroborated by 2+ sources
ABCC9(1), ACTN2(3), CACNB2(1), DMD(1), DSG2(6), JUP(5), PKP2(7), PRKAG2(2), RBM20(3), TRPM4(1), DSP(5), MYH6(4) +26 more
0.140 0.731 2.07e-57 1.22e-55 ✓ sig. —
Erythematosquamous dermatosis Seborrheic dermatitis
21 genes
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FOXP1(1), HERC2(1), KLK6(1), TAP2(1), RALY(1), IRF4(1), IL23R(1), IL2RA(1), TYK2(1), ZMIZ1(1), POLI(1), TYR(1) +9 more
0.538 0.955 1.70e-57 1.00e-55 ✓ sig. Cluster 162 →
Juvenile idiopathic arthritis Polyarticular juvenile idiopathic arthritis
32 genes
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8 of 32 corroborated by 2+ sources
RUNX1(1), ANKRD55(2), CLIC4(1), IL6R(1), JAZF1(1), UBE2L3(1), FAS(1), IL2(1), RUNX3(1), ATXN2(1), HLA-DQB1(2), IRF1(1) +20 more
0.120 1.000 5.86e-58 3.46e-56 ✓ sig. Cluster 311 →
Heart failure Stroke
87 genes
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26 of 87 corroborated by 2+ sources
CASZ1(2), SH2B3(2), ANKRD26(1), ACE(2), ALDH1A2(1), ANKRD31(1), APOB(1), APOC1(3), BAZ1B(1), BCL3(1), FADS1(1), FADS2(1) +75 more
0.123 0.269 2.62e-58 1.55e-56 ✓ sig. —
Diabetic neuropathy Diabetic retinopathy
54 genes
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22 of 54 corroborated by 2+ sources
INS(2), ACE(2), AGT(2), CDKAL1(2), FSTL5(1), HLA-DRB1(2), HMG20A(1), JAZF1(1), MACF1(1), MACIR(1), NRXN3(1), NYAP2(1) +42 more
0.157 0.329 2.33e-58 1.38e-56 ✓ sig. Cluster 73 →
Melanoma Squamous cell carcinoma
123 genes
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38 of 123 corroborated by 2+ sources
ANKRD11(1), NF1(2), RREB1(1), MAP3K1(1), COL2A1(2), NOTCH2(2), PTEN(2), RTEL1(1), TERT(5), TP53(2), TPCN2(1), ASIP(2) +111 more
0.112 0.283 1.65e-58 9.86e-57 ✓ sig. —
Diabetes mellitus type 2 Insomnia
438 genes
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25 of 438 corroborated by 2+ sources
SOX5(1), HMGA2(1), NF1(1), BPTF(1), DPYD(1), JMJD1C(1), RREB1(1), CACNA1D(2), BLTP1(1), ALMS1(1), ABCB9(1), ADAMTS18(1) +426 more
0.118 0.406 1.09e-58 6.55e-57 ✓ sig. Cluster 2 →
Major depressive disorder Substance abuse
209 genes
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58 of 209 corroborated by 2+ sources
SOX5(1), BPTF(1), MCCC2(1), PER2(2), PER3(2), ADCY8(2), ADCYAP1R1(1), AKAP6(1), ALCAM(1), ANO4(1), ARHGAP15(1), AUTS2(1) +197 more
0.092 0.405 8.41e-59 5.04e-57 ✓ sig. Cluster 2 →
Dilated cardiomyopathy Left ventricular noncompaction cardiomyopathy
35 genes
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28 of 35 corroborated by 2+ sources
PRDM16(4), ACTN2(7), CTNNA3(1), DMD(6), DSG2(7), EYA4(5), JUP(1), MYPN(7), PKP2(2), RBM20(8), DSP(7), MYH6(7) +23 more
0.126 0.921 4.35e-59 2.62e-57 ✓ sig. —
Anorexia nervosa Eating disorder
43 genes
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1 of 43 corroborated by 2+ sources
WWOX(1), AKAP6(2), ALDH4A1(1), ASB3(1), BLTP3A(1), CAMK1D(1), CSMD1(1), ERBB3(1), FOXP1(1), MGMT(1), NALF1(1), NCKIPSD(1) +31 more
0.153 0.597 2.41e-59 1.46e-57 ✓ sig. Cluster 69 →
Congenital heart disease Tetralogy of fallot
45 genes
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43 of 45 corroborated by 2+ sources
ANKRD11(2), TBX1(5), NR2F2(4), GATA4(6), NOTCH1(2), HAND1(4), MCTP2(2), NKX2-6(5), NRP1(3), RBFOX2(5), ROBO1(3), TBX5(2) +33 more
0.186 0.395 1.96e-59 1.19e-57 ✓ sig. Cluster 111 →
Macular dystrophy Retinitis pigmentosa
39 genes
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34 of 39 corroborated by 2+ sources
ABCA4(6), ATF6(2), CNGA3(2), CNGB3(2), BEST1(6), IMPG1(4), IMPG2(5), PRPH2(7), CACNA1F(2), COL18A1(1), CTNNA1(3), PDE6B(6) +27 more
0.108 0.886 1.86e-59 1.13e-57 ✓ sig. Cluster 7 →
Non-melanoma skin carcinoma Skin neoplasms
48 genes
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4 of 48 corroborated by 2+ sources
TP53(2), ASIP(2), ATP8B4(1), BNC2(1), CUX1(1), FADS2(1), FOXP1(1), HERC2(1), HLA-DQA1(1), HLA-DQB3(1), HLA-DRB1(1), ICOS(1) +36 more
0.180 0.331 1.81e-59 1.10e-57 ✓ sig. Cluster 29 →
Diabetes mellitus Heart failure
85 genes
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21 of 85 corroborated by 2+ sources
INS(2), CAT(2), ANKRD26(1), AKAP6(1), ALDH1A2(1), ANKRD31(1), APOB(1), APOC1(3), APOE(2), BAZ1B(1), BCL3(1), CRTC1(1) +73 more
0.125 0.287 1.76e-59 1.07e-57 ✓ sig. —
Diabetes mellitus type 2 Major depressive disorder
678 genes
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180 of 678 corroborated by 2+ sources
SOX5(1), CYP17A1(1), HNF1B(6), KANSL1(1), BPTF(1), CASZ1(1), RERE(1), KIF15(1), COMT(2), SEC24C(2), HDAC4(2), ZFPM2(1) +666 more
0.155 0.346 7.59e-60 4.65e-58 ✓ sig. Cluster 2 →
Cone dystrophy Retinitis pigmentosa
37 genes
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36 of 37 corroborated by 2+ sources
ABCA4(6), CNGA3(2), CNGB3(4), GNAT2(4), PDE6C(7), PDE6H(2), PRPH2(7), CACNA1F(2), ABHD12(2), MKKS(2), PCDH15(2), PDE6B(6) +25 more
0.103 0.974 1.64e-60 1.01e-58 ✓ sig. Cluster 7 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.