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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Limb girdle muscular dystrophy Walker-warburg syndrome
9 genes
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9 of 9 corroborated by 2+ sources
DAG1(4), GMPPB(4), CRPPA(5), POMT1(4), POMT2(5), POMGNT1(4), FKRP(5), FKTN(5), POMK(5)
0.196 0.563 1.38e-20 2.70e-19 ✓ sig. Cluster 14 →
Keratinocyte carcinoma Seborrheic keratosis
12 genes
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TERT(1), BNC2(1), RALY(1), IRF4(1), KRT5(1), LPP(1), TYR(1), DEF8(1), CASP8(1), CPVL(1), FLACC1(1), SLC45A2(1)
0.124 0.387 1.30e-20 2.56e-19 ✓ sig. Cluster 29 →
Azoospermia Male infertility single gene azoospermia
13 genes
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12 of 13 corroborated by 2+ sources
DDX25(2), C14orf39(2), MSH5(2), FANCM(2), TDRD9(2), CFTR(3), GCNA(2), MCMDC2(1), MEIOB(2), MOV10L1(2), PDHA2(2), SYCP3(3) +1 more
0.102 0.406 1.29e-20 2.53e-19 ✓ sig. Cluster 31 →
Hereditary breast cancer Lynch syndrome
11 genes
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11 of 11 corroborated by 2+ sources
CHEK2(4), EPCAM(8), MSH2(7), MSH6(8), ATM(3), MRE11(2), PALB2(3), PIK3CA(3), PMS2(6), MLH1(8), MUTYH(2)
0.155 0.344 1.24e-20 2.44e-19 ✓ sig. —
Infantile spasms West syndrome
8 genes
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CRH(1), POMC(1), STXBP1(1), TSC2(1), TSC1(1), UPB1(1), HSD17B4(1), MC2R(1)
0.235 0.727 1.23e-20 2.42e-19 ✓ sig. Cluster 328 →
Amelogenesis imperfecta Hypomaturation amelogenesis imperfecta
7 genes
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7 of 7 corroborated by 2+ sources
SLC24A4(6), AMELX(7), GPR68(6), KLK4(6), MMP20(6), ODAPH(6), WDR72(7)
0.269 1.000 1.18e-20 2.33e-19 ✓ sig. Cluster 366 →
Cornelia de lange syndrome De lange syndrome
6 genes
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6 of 6 corroborated by 2+ sources
HDAC8(7), SMC1A(5), SMC3(7), NIPBL(6), BRD4(6), RAD21(7)
0.545 1.000 1.14e-20 2.24e-19 ✓ sig. Cluster 297 →
Congenital nonspherocytic hemolytic anemia Hemolytic anemia
9 genes
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9 of 9 corroborated by 2+ sources
GCLC(3), GSR(6), G6PD(6), GATA1(2), HK1(4), PKLR(3), AK1(5), GPI(6), NT5C3A(6)
0.153 0.750 1.04e-20 2.04e-19 ✓ sig. —
Myositis Sjogren syndrome
14 genes
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9 of 14 corroborated by 2+ sources
DGKQ(3), HLA-DQA1(2), HLA-DRA(1), HLA-DRB1(2), TNIP1(3), HLA-DQB1(2), ATG5(1), IRF5(1), PTPN22(2), TNFAIP3(3), IL1RN(2), STAT4(3) +2 more
0.118 0.230 9.59e-21 1.89e-19 ✓ sig. Cluster 25 →
Aplasia of the vermis Bardet-biedl syndrome
13 genes
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7 of 13 corroborated by 2+ sources
KIF7(1), USH2A(1), WDPCP(7), RPGRIP1L(1), NPHP3(1), TMEM67(3), NPHP1(3), CEP290(5), IFT172(5), TTC21B(1), IFT74(6), MKS1(5) +1 more
0.129 0.241 9.16e-21 1.81e-19 ✓ sig. Cluster 8 →
Cannabis abuse Obsessive-compulsive disorder
24 genes
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3 of 24 corroborated by 2+ sources
COMT(1), ABT1(1), BANK1(1), CTNND1(1), EPHX2(1), LSAMP(1), PDE4B(1), PTPRF(1), SEMA6D(1), SLC39A8(1), TCF20(1), TENM2(1) +12 more
0.073 0.207 9.00e-21 1.78e-19 ✓ sig. —
Dementia Scoliosis
105 genes
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1 of 105 corroborated by 2+ sources
ADAMTS1(1), ANK3(1), ASB3(1), CCDC171(1), CCDC91(1), CHN2(1), CNTNAP2(1), CRADD(1), CSMD1(1), CYYR1(1), DGKB(1), DLG2(1) +93 more
0.069 0.178 8.94e-21 1.77e-19 ✓ sig. Cluster 2 →
Endometriosis Major depressive disorder
116 genes
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59 of 116 corroborated by 2+ sources
ETV6(1), ANO4(3), ASCC1(1), BSN(1), C6orf118(1), CACNA1A(1), CAMK1D(1), COP1(1), EGFR(2), ERBB4(1), ESR2(3), ETV1(1) +104 more
0.052 0.309 7.82e-21 1.55e-19 ✓ sig. —
Ciliopathy Orofaciodigital syndrome
12 genes
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11 of 12 corroborated by 2+ sources
WDPCP(3), TMEM216(4), TMEM231(4), SCLT1(1), TBC1D32(5), IFT57(5), OFD1(6), TOPORS(3), TCTN3(7), TMEM107(4), PDE6D(3), DDX59(7)
0.130 0.375 7.29e-21 1.45e-19 ✓ sig. Cluster 8 →
Hypertension Open angle glaucoma
84 genes
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23 of 84 corroborated by 2+ sources
HMGA2(1), PRDM16(1), RERE(1), ZFPM2(1), CHEK2(1), RUNX1(1), TP53(2), SPI1(1), ALCAM(1), APOE(3), BCAS3(1), BNC2(1) +72 more
0.059 0.228 6.97e-21 1.38e-19 ✓ sig. —
Atrial septal defect Ventricular septal defect
11 genes
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5 of 11 corroborated by 2+ sources
BMP2(1), CUL9(1), GATA4(6), SMARCA4(1), TBX5(1), TBX20(6), NKX2-5(6), ISL1(1), CITED2(7), GATA6(6), HUWE1(1)
0.164 0.314 5.93e-21 1.18e-19 ✓ sig. Cluster 364 →
hereditary nonpolyposis colon cancer Lynch syndrome
8 genes
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8 of 8 corroborated by 2+ sources
CHEK2(3), SMARCA4(2), EPHX1(2), PTPRJ(2), CDKN1B(2), NFKBIZ(2), XRCC4(2), FAN1(3)
0.160 1.000 5.76e-21 1.15e-19 ✓ sig. —
Anxiety disorder Post-traumatic stress disorder
25 genes
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4 of 25 corroborated by 2+ sources
SOX5(1), BPTF(1), ARHGAP15(1), CNTNAP5(1), DCC(1), FOXP2(1), GRM8(3), MAD1L1(1), MAPT(3), PDE4B(1), SDK1(1), SORCS3(1) +13 more
0.077 0.171 5.26e-21 1.05e-19 ✓ sig. Cluster 2 →
Left ventricular disease Restrictive cardiomyopathy
11 genes
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6 of 11 corroborated by 2+ sources
PRDM16(6), ACTA1(1), MYPN(3), DSP(1), MYH6(1), SYNE2(2), MYH7(3), TTN(1), ACTC1(2), TNNT2(3), SLC25A4(1)
0.139 0.478 4.85e-21 9.65e-20 ✓ sig. Cluster 4 →
Hodgkin lymphoma Non-hodgkins lymphoma
20 genes
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TCF3(1), CELF2(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(1), BCL2(1), HLA-DQB1(1), EXOC2(1), IRF4(1), EOMES(1), SP140(1) +8 more
0.088 0.180 4.63e-21 9.24e-20 ✓ sig. —
Leigh syndrome Mitochondrial encephalomyopathy
11 genes
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11 of 11 corroborated by 2+ sources
MTRFR(3), FARS2(3), NDUFS2(5), POLG(2), DNM1L(4), SCO2(3), NDUFV2(4), LONP1(4), FBXL4(3), FOXRED1(5), MFF(2)
0.097 0.688 4.57e-21 9.11e-20 ✓ sig. Cluster 50 →
Limb girdle muscular dystrophy Myopathy
14 genes
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12 of 14 corroborated by 2+ sources
DAG1(2), PLEC(2), HMGCR(4), ASTN2(1), CRPPA(3), TRAPPC11(6), ANO5(4), TTN(3), DYSF(6), LAMA2(1), CAPN3(7), TOR1AIP1(6) +2 more
0.102 0.368 4.19e-21 8.37e-20 ✓ sig. Cluster 14 →
Cerebellar ataxia Postaxial polydactyly
12 genes
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KIF7(1), ND1(1), ND2(1), ATP6(1), COX3(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.097 0.571 4.16e-21 8.32e-20 ✓ sig. —
Mesothelioma Peritoneal neoplasms
10 genes
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1 of 10 corroborated by 2+ sources
WT1(3), PDPN(1), CALB2(1), VIM(1), CTNNB1(1), SLC2A1(1), MCAM(1), MUC1(1), IGF2BP3(1), MLANA(1)
0.068 1.000 4.00e-21 8.01e-20 ✓ sig. —
Anophthalmia/microphthalmia-esophageal atresia syndrome Microphthalmos
10 genes
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9 of 10 corroborated by 2+ sources
PITX3(3), TFAP2A(2), PAX6(2), SOX2(4), STRA6(2), OTX2(2), PORCN(2), RAX(2), VAX1(2), VSX2(1)
0.192 0.400 3.94e-21 7.90e-20 ✓ sig. Cluster 56 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.