Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hereditary breast cancer Rhabdomyosarcoma
6 genes
Show details
6 of 6 corroborated by 2+ sources
MSH2(2), MSH6(2), NBN(2), PMS2(3), SLC67A1(4), MLH1(2)
0.111 0.222 1.41e-11 1.53e-10 ✓ sig. —
Diffuse cutaneous systemic sclerosis Systemic scleroderma
5 genes
Show details
2 of 5 corroborated by 2+ sources
HLA-DPB1(1), IRF5(3), STAT4(2), TNPO3(1), HLA-DPA1(1)
0.147 0.333 1.39e-11 1.51e-10 ✓ sig. Cluster 25 →
Hereditary atrial fibrillation Ventricular fibrillation
6 genes
Show details
6 of 6 corroborated by 2+ sources
KCNE2(3), KCNJ2(2), NKX2-5(2), SCN5A(4), TTN(2), SCN1B(2)
0.109 0.250 1.38e-11 1.50e-10 ✓ sig. Cluster 4 →
Ciliopathy Senior-loken syndrome
6 genes
Show details
6 of 6 corroborated by 2+ sources
WDR19(6), SCLT1(2), SDCCAG8(5), IQCB1(7), CEP164(2), TRAF3IP1(6)
0.076 0.462 1.30e-11 1.41e-10 ✓ sig. Cluster 8 →
Androgenetic alopecia Colorectal cancer
64 genes
Show details
3 of 64 corroborated by 2+ sources
KANSL1(1), RREB1(1), HDAC4(1), FGFR3(3), BORCS5(1), CCDC91(1), CYRIB(1), EBF1(1), FADS2(1), FMN1(1), GLIS3(1), HDAC9(1) +52 more
0.048 0.157 1.23e-11 1.34e-10 ✓ sig. Cluster 20 →
Ovarian neoplasms Renal cell carcinoma
14 genes
Show details
1 of 14 corroborated by 2+ sources
PTEN(1), TP53(1), SOD2(1), IL6(1), ALOX5(1), TNFSF10(1), MET(5), ERBB2(1), SLC2A1(1), ALOX12B(1), PIK3CA(1), BAP1(1) +2 more
0.054 0.107 1.22e-11 1.33e-10 ✓ sig. Cluster 5 →
Atrophic macular degeneration Retinopathy
8 genes
Show details
1 of 8 corroborated by 2+ sources
CFI(1), C2(1), C3(1), CETP(1), CFH(1), RDH5(1), ARMS2(1), RPGR(6)
0.079 0.154 1.21e-11 1.32e-10 ✓ sig. Cluster 187 →
Appendiceal disorder Appendicitis
4 genes
Show details
MND1(1), TMEM131L(1), FFAR2(1), KRTDAP(1)
0.129 1.000 1.17e-11 1.28e-10 ✓ sig. —
Arthrogryposis multiplex congenita Digitotalar dysmorphism
5 genes
Show details
4 of 5 corroborated by 2+ sources
MYH3(1), TPM2(2), NALCN(2), TNNI2(2), TNNT3(2)
0.068 0.833 1.16e-11 1.27e-10 ✓ sig. —
Pulmonary fibrosis Pulmonary hypertension
10 genes
Show details
10 of 10 corroborated by 2+ sources
ACE(2), TNF(2), CAV1(5), CXCL8(2), CCL2(2), ACE2(2), EDN1(2), CALCA(2), TGFA(2), ABCA3(2)
0.063 0.164 1.15e-11 1.25e-10 ✓ sig. —
monogenic diabetes Transient neonatal diabetes mellitus
4 genes
Show details
4 of 4 corroborated by 2+ sources
INS(3), ABCC8(7), KCNJ11(6), GCK(3)
0.250 0.444 1.13e-11 1.23e-10 ✓ sig. Cluster 36 →
Cholangiocarcinoma Nasopharyngeal carcinoma
6 genes
Show details
1 of 6 corroborated by 2+ sources
PTEN(1), TP53(3), ARID1A(1), KRAS(1), ERBB2(1), BAP1(1)
0.109 0.273 1.08e-11 1.18e-10 ✓ sig. —
Cutaneous squamous cell carcinoma Erythematosquamous dermatosis
6 genes
Show details
FOXP1(1), RALY(1), IRF4(1), TYR(1), MC1R(1), SLC45A2(1)
0.109 0.273 1.08e-11 1.18e-10 ✓ sig. —
Congenital ear anomaly Retinitis pigmentosa-deafness syndrome
5 genes
Show details
PCDH15(1), USH2A(1), CDH23(1), MYO7A(1), C10orf105(1)
0.132 0.455 1.08e-11 1.18e-10 ✓ sig. —
Melanocytic nevus Seborrheic keratosis
5 genes
Show details
TYR(1), DEF8(1), CASP8(1), FLACC1(1), SLC45A2(1)
0.132 0.455 1.08e-11 1.18e-10 ✓ sig. —
Non-immune hydrops fetalis Noonan syndrome
7 genes
Show details
6 of 7 corroborated by 2+ sources
KRAS(8), SHOC2(7), PTPN11(7), LZTR1(7), HRAS(3), RIT1(6), LRRC56(1)
0.092 0.189 1.08e-11 1.18e-10 ✓ sig. Cluster 42 →
Oculocutaneous albinism Skin hair eye pigmentation variation
4 genes
Show details
4 of 4 corroborated by 2+ sources
OCA2(7), SLC45A2(6), SLC24A5(4), TYRP1(4)
0.235 0.571 1.07e-11 1.17e-10 ✓ sig. Cluster 298 →
Costello syndrome Epidermal nevus
4 genes
Show details
3 of 4 corroborated by 2+ sources
KRAS(3), NRAS(5), HRAS(6), LRRC56(1)
0.235 0.571 1.07e-11 1.17e-10 ✓ sig. —
Basal ganglia disease Fahr's disease
4 genes
Show details
4 of 4 corroborated by 2+ sources
PDGFRB(2), XPR1(2), PDGFB(2), SLC20A2(2)
0.235 0.571 1.07e-11 1.17e-10 ✓ sig. Cluster 390 →
Hypercalcemia Osteolysis
4 genes
Show details
4 of 4 corroborated by 2+ sources
TNF(2), PTHLH(2), TNFRSF11B(2), TNFSF11(2)
0.235 0.571 1.07e-11 1.17e-10 ✓ sig. Cluster 262 →
Catecholaminergic polymorphic ventricular tachycardia Paroxysmal familial ventricular fibrillation
4 genes
Show details
2 of 4 corroborated by 2+ sources
DSP(1), LMNA(1), RYR2(7), SCN5A(2)
0.182 0.800 1.03e-11 1.14e-10 ✓ sig. Cluster 4 →
Anemia Lymphoma
9 genes
Show details
8 of 9 corroborated by 2+ sources
MTHFR(2), PON1(2), CSF2(2), EPHX1(2), CSF3(2), IFNA2(1), KRAS(2), NRAS(2), TYMS(2)
0.070 0.170 1.00e-11 1.11e-10 ✓ sig. —
Congenital neurologic anomalies Intellectual disability
11 genes
Show details
7 of 11 corroborated by 2+ sources
FOXG1(1), ANK3(2), AP4M1(2), CRBN(2), TUSC3(2), CTNNB1(3), TMEM67(1), AP4B1(2), AP4E1(2), NALCN(1), TSC2(1)
0.061 0.145 9.44e-12 1.04e-10 ✓ sig. Cluster 6 →
Myopathy Neuromuscular disease
9 genes
Show details
2 of 9 corroborated by 2+ sources
SCN4A(1), ACTA1(1), RAPSN(2), RYR1(3), MYH7(1), TTN(1), MSTO1(1), EMD(1), GGPS1(1)
0.063 0.225 9.31e-12 1.03e-10 ✓ sig. —
Differentiated thyroid carcinoma Toxic nodular goiter
6 genes
Show details
1 of 6 corroborated by 2+ sources
NFIA(1), TERT(2), NRG1(1), SLK(1), STN1(1), MBIP(1)
0.098 0.353 9.11e-12 1.00e-10 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.