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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Beckwith-wiedemann syndrome Silver-russell syndrome
4 genes
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2 of 4 corroborated by 2+ sources
IGF2(7), INS-IGF2(1), CDKN1C(8), -(1)
0.222 0.400 2.95e-11 3.09e-10 ✓ sig. Cluster 199 →
Jeune syndrome Saldino-noonan syndrome
5 genes
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3 of 5 corroborated by 2+ sources
NEK1(1), DYNC2H1(5), DYNC2I1(3), DYNC2I2(3), DYNLT2B(1)
0.104 0.500 2.94e-11 3.08e-10 ✓ sig. Cluster 22 →
Breast neoplasms Endometriosis
41 genes
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40 of 41 corroborated by 2+ sources
WT1(2), MAP3K1(2), PTEN(2), EGFR(2), ESR2(2), GRIK2(2), PTPRD(2), RARB(3), RSPO3(2), BCL2(2), CYP19A1(2), ESR1(3) +29 more
0.048 0.109 2.85e-11 2.99e-10 ✓ sig. —
Cleft lip Cleft lip and cleft of alveolar process of maxilla
4 genes
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2 of 4 corroborated by 2+ sources
TP63(2), IRF6(2), MSX1(1), NECTIN1(1)
0.105 1.000 2.82e-11 2.96e-10 ✓ sig. —
Glycogen phosphorylase kinase deficiency Glycogen storage disease
4 genes
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4 of 4 corroborated by 2+ sources
PHKA1(6), PHKA2(6), PHKB(7), PHKG2(8)
0.105 1.000 2.82e-11 2.96e-10 ✓ sig. —
Autoinflammatory syndrome Hereditary hemophagocytic lymphohistiocytosis
4 genes
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4 of 4 corroborated by 2+ sources
PRF1(2), UNC13D(2), STX11(2), STXBP2(2)
0.105 1.000 2.82e-11 2.96e-10 ✓ sig. —
Arteriosclerosis Hypercholesterolemia
7 genes
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6 of 7 corroborated by 2+ sources
APOB(6), APOE(2), LDLR(6), ICAM1(2), PON1(2), ABCG5(1), VCAM1(2)
0.086 0.171 2.74e-11 2.88e-10 ✓ sig. Cluster 141 →
hereditary pheochromocytoma-paraganglioma Pheochromocytoma
4 genes
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4 of 4 corroborated by 2+ sources
SDHB(2), SDHD(2), TMEM127(4), MAX(4)
0.200 0.571 2.72e-11 2.85e-10 ✓ sig. Cluster 81 →
Digestive system disease Esophageal adenocarcinoma
8 genes
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ALDH1A2(1), BCL3(1), CRTC1(1), FOXP1(1), KHDRBS2(1), DPP6(1), BARX1(1), GOLIM4(1)
0.066 0.229 2.68e-11 2.82e-10 ✓ sig. —
Epilepsy of infancy with migrating focal seizures Rolandic epilepsy
5 genes
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5 of 5 corroborated by 2+ sources
SCN1A(2), SCN2A(2), TBC1D24(5), KCNT1(2), PLCB1(2)
0.096 0.556 2.66e-11 2.79e-10 ✓ sig. —
Malignant migrating partial seizures of infancy Rolandic epilepsy
5 genes
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3 of 5 corroborated by 2+ sources
SCN1A(2), SCN2A(1), TBC1D24(5), KCNT1(1), PLCB1(2)
0.096 0.556 2.66e-11 2.79e-10 ✓ sig. —
Anorexia nervosa Generalized anxiety disorder
11 genes
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ASB3(1), MAD1L1(1), MGMT(1), SPAG16(1), TMEM106B(1), ANKS1B(1), ADGRL4(1), FAM120A(1), IFI44(1), IGSF9B(1), LRFN5(1)
0.039 0.275 2.64e-11 2.78e-10 ✓ sig. Cluster 69 →
Diverticular disease Obstructive pulmonary disease
34 genes
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2 of 34 corroborated by 2+ sources
RREB1(1), ARHGEF28(1), ICA1L(1), MAML3(1), MAPKAP1(1), MMS22L(1), SCARA5(1), SLC35F3(2), TBX5(1), TRPS1(1), VAPA(1), EFEMP1(1) +22 more
0.044 0.137 2.64e-11 2.78e-10 ✓ sig. —
Epilepsy with auditory features Lateral temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
RELN(3), DEPDC5(2), LGI1(4)
0.500 0.750 2.63e-11 2.77e-10 ✓ sig. —
Hypertyrosinemia Tyrosinemia
3 genes
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3 of 3 corroborated by 2+ sources
FAH(7), HPD(6), TAT(7)
0.500 0.750 2.63e-11 2.77e-10 ✓ sig. Cluster 247 →
Autoimmune polyendocrine syndrome Oropharyngeal neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
0.500 0.750 2.63e-11 2.77e-10 ✓ sig. Cluster 1 →
Alport syndrome Alport syndrome, x-linked
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(5), COL4A3(5), COL4A4(5)
0.500 0.750 2.63e-11 2.77e-10 ✓ sig. Cluster 49 →
Cachexia Colitis
5 genes
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5 of 5 corroborated by 2+ sources
IGF1(2), TNF(2), IL6(2), PTGS2(2), GHRL(2)
0.122 0.417 2.58e-11 2.72e-10 ✓ sig. —
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency Mitochondrial complex deficiency
5 genes
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5 of 5 corroborated by 2+ sources
SCO2(5), COA5(5), COA6(5), COX15(5), SURF1(4)
0.042 1.000 2.53e-11 2.68e-10 ✓ sig. Cluster 50 →
B-cell acute lymphoblastic leukemia Thyroid disease
8 genes
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1 of 8 corroborated by 2+ sources
SPATA13(1), CCR6(1), CCL2(3), CEP43(1), TG(1), STAT4(1), ARID5B(1), RNASET2(1)
0.075 0.151 2.53e-11 2.68e-10 ✓ sig. —
Cleft lip and cleft of alveolar process of maxilla Complete unilateral cleft lip
4 genes
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TP63(1), IRF6(1), MSX1(1), NECTIN1(1)
0.108 1.000 2.52e-11 2.66e-10 ✓ sig. —
Cardiovascular disease Preeclampsia
19 genes
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7 of 19 corroborated by 2+ sources
ACE(3), ADRA1D(1), AGT(3), MECOM(1), PREX1(1), NOS3(4), MTHFR(3), PPARG(2), FGF5(1), PRDM8(1), FTO(2), PLCE1(1) +7 more
0.037 0.194 2.48e-11 2.62e-10 ✓ sig. —
Blindness Leber congenital amaurosis
6 genes
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4 of 6 corroborated by 2+ sources
ABCA4(1), AIPL1(6), USH2A(1), LCA5(7), RPE65(6), CEP290(6)
0.074 0.429 2.46e-11 2.61e-10 ✓ sig. —
Graft-versus-host disease Graves ophthalmopathy
5 genes
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2 of 5 corroborated by 2+ sources
IL10(3), IL2(1), CTLA4(2), PTPN22(1), IL1RN(1)
0.143 0.278 2.39e-11 2.53e-10 ✓ sig. Cluster 147 →
Obstructive airway disease Sleep apnea
9 genes
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ACE(1), NOS3(1), TNF(1), SLC6A4(1), MMP9(1), CRP(1), EDN1(1), LEPR(1), ADRB1(1)
0.064 0.184 2.36e-11 2.50e-10 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.