Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Intestinal pseudo-obstruction Megacystis microcolon intestinal hypoperistalsis syndrome
3 genes
Show details
2 of 3 corroborated by 2+ sources
MYH11(5), NDE1(1), ACTG2(6)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 220 →
Familial temporal lobe epilepsy Lateral temporal lobe epilepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
RELN(4), LGI1(5), GAL(3)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. —
Autoimmune polyendocrine syndrome Benign hereditary chorea
3 genes
Show details
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Pemphigus vulgaris
3 genes
Show details
3 of 3 corroborated by 2+ sources
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Benign hereditary chorea Oropharyngeal neoplasms
3 genes
Show details
3 of 3 corroborated by 2+ sources
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Congenital glaucoma Primary congenital glaucoma
3 genes
Show details
3 of 3 corroborated by 2+ sources
CYP1B1(2), TEK(4), LTBP2(3)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. —
Amphetamine or sympathomimetic abuse Hyperkinesia
7 genes
Show details
7 of 7 corroborated by 2+ sources
GABBR1(2), ADORA2A(2), DRD1(2), DRD2(2), DRD3(2), FOS(2), SLC6A3(2)
0.067 0.212 2.28e-10 2.20e-9 ✓ sig. Cluster 13 →
Esophageal squamous cell carcinoma Transitional cell carcinoma
8 genes
Show details
TP53(1), KMT2C(1), PTGS2(1), CREBBP(1), CDKN1A(1), KDM6A(1), EP300(1), CCND1(1)
0.052 0.242 2.27e-10 2.19e-9 ✓ sig. Cluster 5 →
Dysarthria Spastic paraplegia
7 genes
Show details
3 of 7 corroborated by 2+ sources
PNPLA6(4), ZGRF1(1), SPG7(4), SMC1A(1), SPART(4), BIVM-ERCC5(1), ERCC5(1)
0.051 0.318 2.26e-10 2.19e-9 ✓ sig. —
Bradycardia Chiari-frommel syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
PRL(2), DRD2(2), GNRH1(2), LHB(2)
0.133 0.571 2.23e-10 2.15e-9 ✓ sig. —
Hemolytic anemia Hereditary hemolytic anemia
5 genes
Show details
5 of 5 corroborated by 2+ sources
GCLC(2), HBB(2), HK1(4), GPI(5), BPGM(3)
0.081 0.455 2.19e-10 2.12e-9 ✓ sig. Cluster 105 →
Atrial flutter Wolff-parkinson-white syndrome
8 genes
Show details
8 of 8 corroborated by 2+ sources
TBX5(2), PITX2(2), MYH6(2), CASQ2(2), KCNH2(2), SCN5A(2), TTN(2), GJA5(2)
0.064 0.157 2.18e-10 2.11e-9 ✓ sig. Cluster 4 →
Celiac disease Immunodeficiency
15 genes
Show details
15 of 15 corroborated by 2+ sources
IRF1(5), IRF4(3), IFNG(5), BACH2(6), CARD9(3), CD28(5), IL2RA(2), FCGR3A(3), FASLG(2), CD247(4), ITPR3(2), TLR8(5) +3 more
0.047 0.108 2.15e-10 2.08e-9 ✓ sig. —
Costello syndrome Non-immune hydrops fetalis
5 genes
Show details
4 of 5 corroborated by 2+ sources
KRAS(3), SHOC2(2), PTPN11(3), HRAS(6), LRRC56(1)
0.093 0.385 2.14e-10 2.08e-9 ✓ sig. Cluster 42 →
Anhedonia Memory disorders
6 genes
Show details
6 of 6 corroborated by 2+ sources
COMT(2), HTR1A(2), DRD2(2), SLC6A3(2), SLC6A4(2), SLC17A7(2)
0.083 0.231 2.13e-10 2.07e-9 ✓ sig. —
Polycythemia Polycythemia vera
4 genes
Show details
3 of 4 corroborated by 2+ sources
HBA1(2), H2BC4(1), HBB(2), JAK2(5)
0.160 0.444 2.08e-10 2.01e-9 ✓ sig. —
Cachexia Edema
5 genes
Show details
TNF(1), IL6(1), PTGS2(1), PTHLH(1), CXCL8(1)
0.088 0.417 2.06e-10 2.00e-9 ✓ sig. —
Bicuspid aortic valve Thoracic aortic aneurysm and aortic dissection
5 genes
Show details
4 of 5 corroborated by 2+ sources
NOTCH1(3), SLC2A10(1), MYH11(5), ROBO4(2), GATA5(2)
0.098 0.357 2.04e-10 1.98e-9 ✓ sig. —
Cancer Colorectal adenoma
17 genes
Show details
RTEL1(1), TERT(1), HLA-DQA1(1), HLA-DRB1(1), PREX1(1), TCF7L2(1), TET2(1), TTC33(1), ATXN2(1), HLA-B(1), MUC22(1), SMAD7(1) +5 more
0.044 0.122 2.02e-10 1.96e-9 ✓ sig. Cluster 20 →
Deafness, x-linked Hearing loss with stapes fixation
3 genes
Show details
3 of 3 corroborated by 2+ sources
GJB6(3), GJB2(3), POU3F4(3)
0.273 1.000 1.97e-10 1.91e-9 ✓ sig. Cluster 210 →
Deafness, x-linked X-linked hearing loss with perilymphatic gusher
3 genes
Show details
3 of 3 corroborated by 2+ sources
GJB6(2), GJB2(2), POU3F4(3)
0.273 1.000 1.97e-10 1.91e-9 ✓ sig. Cluster 210 →
Bilateral perisylvian polymicrogyria Perisylvian syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
PI4KA(2), ADGRG1(2), SRPX2(2)
0.273 1.000 1.97e-10 1.91e-9 ✓ sig. —
Brachycephaly Coronal craniosynostosis
3 genes
Show details
FGFR3(1), TCF12(1), TWIST1(1)
0.273 1.000 1.97e-10 1.91e-9 ✓ sig. Cluster 127 →
Female infertility Uterine fibroid
16 genes
Show details
6 of 16 corroborated by 2+ sources
BNC1(1), CHEK2(1), TP53(2), ESR2(2), TTC28(1), ESR1(3), IGF1(3), PAPPA(2), SYNE1(1), GREB1(1), CDC42(1), WNT4(3) +4 more
0.041 0.155 1.89e-10 1.84e-9 ✓ sig. —
Fanconi anemia Hereditary breast-ovarian cancer syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
PALB2(7), BRCA2(8), BRCA1(8), RAD51C(8)
0.098 0.800 1.75e-10 1.71e-9 ✓ sig. Cluster 132 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.