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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cancer Peptic ulcer disease
15 genes
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1 of 15 corroborated by 2+ sources
BCL3(1), FOXP1(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(2), JAZF1(1), LINC02210-CRHR1(1), MAML3(1), MECOM(1), NSF(1), TTC33(1), JRK(1) +3 more
0.041 0.124 1.99e-9 1.75e-8 ✓ sig. —
Endometriosis Uterine fibroid
28 genes
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5 of 28 corroborated by 2+ sources
WT1(1), ETV6(1), RUNX1(1), CDK2AP1(1), ESR2(3), ETV1(1), MTRFR(1), NAALADL2(1), RSPO3(1), ESR1(2), IGF1(3), RNLS(1) +16 more
0.043 0.092 2.00e-9 1.75e-8 ✓ sig. —
Pemphigus vulgaris Uveomeningoencephalitic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
0.250 0.429 2.01e-9 1.76e-8 ✓ sig. Cluster 1 →
Hereditary hemochromatosis Iron overload
3 genes
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3 of 3 corroborated by 2+ sources
TF(3), HAMP(2), SLC40A1(2)
0.250 0.429 2.01e-9 1.76e-8 ✓ sig. —
Benign hereditary chorea Pemphigus vulgaris
3 genes
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3 of 3 corroborated by 2+ sources
0.250 0.429 2.01e-9 1.76e-8 ✓ sig. Cluster 1 →
Carney complex hereditary pheochromocytoma-paraganglioma
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(3), SDHA(3), SDHC(3)
0.250 0.429 2.01e-9 1.76e-8 ✓ sig. Cluster 81 →
Lymphatic metastasis Mouth neoplasms
6 genes
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ANXA1(1), SOD2(1), MT1A(1), CDKN2A(1), CLDN1(1), SFN(1)
0.068 0.200 2.02e-9 1.77e-8 ✓ sig. Cluster 5 →
Nasal polyp Sinusitis
5 genes
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HLA-DQA1(1), HLA-DRB1(1), HLA-B(1), IL33(1), TSLP(1)
0.088 0.227 2.04e-9 1.78e-8 ✓ sig. —
Brain edema Cerebral hemorrhage
4 genes
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PLAU(1), S100B(1), PLAT(1), MMP9(1)
0.111 0.400 2.11e-9 1.85e-8 ✓ sig. —
Cerebrovascular disorder Heart valve disease
7 genes
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3 of 7 corroborated by 2+ sources
ACE(1), IL1B(2), CDK6(2), CELSR2(1), LPA(1), PSRC1(1), PITX2(2)
0.059 0.171 2.16e-9 1.88e-8 ✓ sig. —
B-cell acute lymphoblastic leukemia Lymphoblastic leukemia
7 genes
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1 of 7 corroborated by 2+ sources
IKZF1(1), PIP4K2A(1), GSDMB(1), ARID5B(1), LHPP(1), FLT3(2), CEBPE(1)
0.063 0.123 2.16e-9 1.88e-8 ✓ sig. Cluster 3 →
Hereditary hemorrhagic telangiectasia Pulmonary arterial hypertension
4 genes
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4 of 4 corroborated by 2+ sources
SMAD4(4), ENG(7), GDF2(8), ACVRL1(7)
0.082 0.571 2.21e-9 1.93e-8 ✓ sig. —
Hemorrhage Thromboembolism
4 genes
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PLAU(1), F2(1), PLAT(1), F7(1)
0.121 0.333 2.23e-9 1.94e-8 ✓ sig. Cluster 55 →
Idiopathic generalized epilepsy Myoclonic epilepsy
4 genes
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4 of 4 corroborated by 2+ sources
GABRD(5), GABRA1(4), CACNB4(4), CLCN2(5)
0.121 0.333 2.23e-9 1.94e-8 ✓ sig. Cluster 47 →
Diffuse large b-cell lymphoma Urinary bladder neoplasms
9 genes
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CAT(1), NECTIN2(1), BCL2(1), FAS(1), SOD2(1), KMT2D(1), MYC(1), CDKN2A(1), GLI1(1)
0.047 0.158 2.31e-9 2.01e-8 ✓ sig. —
Potassium deficiency Primary aldosteronism
4 genes
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CASZ1(1), B3GLCT(1), LSP1(1), RXFP2(1)
0.129 0.250 2.36e-9 2.05e-8 ✓ sig. Cluster 143 →
Aortic valve disease Marfan syndrome
7 genes
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7 of 7 corroborated by 2+ sources
FBN1(7), NOTCH1(4), COL5A1(2), TGFB2(2), COL1A1(2), COL3A1(2), LOX(2)
0.059 0.163 2.37e-9 2.06e-8 ✓ sig. —
Thyroid disease Toxic nodular goiter
5 genes
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NFIA(1), INSR(1), TG(1), FAM227B(1), MICOS10(1)
0.076 0.294 2.39e-9 2.08e-8 ✓ sig. —
Hodgkin disease Lymphoma
5 genes
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CSF3(1), IFNA2(1), PTPN1(1), CFLAR(1), TNFSF8(1)
0.076 0.294 2.39e-9 2.08e-8 ✓ sig. —
Anterior segment mesenchymal dysgenesis Rieger syndrome
3 genes
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1 of 3 corroborated by 2+ sources
COL4A1(1), FOXC1(1), PITX2(2)
0.188 0.750 2.39e-9 2.08e-8 ✓ sig. —
Hypercholesterolemia Hypoalphalipoproteinemia
4 genes
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4 of 4 corroborated by 2+ sources
APOA1(4), ABCA1(5), APOB(6), PCSK9(6)
0.080 0.571 2.42e-9 2.10e-8 ✓ sig. —
Calcinosis Fahr's disease
4 genes
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4 of 4 corroborated by 2+ sources
PDGFRB(2), XPR1(2), PDGFB(2), SLC20A2(2)
0.080 0.571 2.42e-9 2.10e-8 ✓ sig. —
Immune system disease Uveomeningoencephalitic syndrome
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), PTPN22(2), STAT4(2)
0.080 0.571 2.42e-9 2.10e-8 ✓ sig. Cluster 1 →
Urticaria Uveomeningoencephalitic syndrome
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-DQB1(2), PTPN22(2)
0.080 0.571 2.42e-9 2.10e-8 ✓ sig. —
Congenital cartilage disorder Intervertebral disc disease
4 genes
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3 of 4 corroborated by 2+ sources
COL11A1(3), TGFB1(2), COL9A2(1), COL9A3(3)
0.108 0.400 2.44e-9 2.11e-8 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.