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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Lissencephaly Microcephaly
9 genes
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9 of 9 corroborated by 2+ sources
FOXG1(2), TUBG1(3), DYNC1H1(2), NBN(2), CASK(2), NDE1(6), ASPM(5), CPAP(6), TUBA1A(5)
0.061 0.180 4.87e-11 5.00e-10 ✓ sig. —
Mitochondrial dna depletion syndrome Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis
4 genes
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2 of 4 corroborated by 2+ sources
POLG(6), TWNK(6), POLGARF(1), FANCI(1)
0.129 0.800 5.07e-11 5.20e-10 ✓ sig. Cluster 97 →
Aortic valve disease Bicuspid aortic valve
6 genes
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6 of 6 corroborated by 2+ sources
NOTCH1(5), ROBO4(6), GATA5(2), MGP(2), SMAD6(6), NKX2-5(2)
0.067 0.429 5.10e-11 5.23e-10 ✓ sig. —
Myocardial infarction Venous thromboembolism
41 genes
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11 of 41 corroborated by 2+ sources
ZFPM2(1), SH2B3(3), SPI1(1), ADGRL2(1), CUX2(1), DGKB(1), FNBP4(1), IL6R(1), KALRN(1), NUP160(1), PLCG2(1), SERPINE1(2) +29 more
0.046 0.120 5.12e-11 5.26e-10 ✓ sig. Cluster 78 →
Aneurysm Large artery stroke
7 genes
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LRP1(1), CHRNB4(1), CELSR2(1), LPA(1), MMP13(1), PSRC1(1), ZPR1(1)
0.071 0.259 5.32e-11 5.46e-10 ✓ sig. —
Aniridia Anterior segment mesenchymal dysgenesis
4 genes
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4 of 4 corroborated by 2+ sources
FOXC1(2), FOXD3(2), PAX6(4), PITX2(2)
0.200 0.444 5.37e-11 5.50e-10 ✓ sig. —
Cleft palate and bilateral cleft lip Optic neuropathy
4 genes
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ND1(1), ATP6(1), ATP8(1), ND4(1)
0.200 0.444 5.37e-11 5.50e-10 ✓ sig. Cluster 32 →
Latent autoimmune diabetes in adults Myasthenia gravis
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), ATXN2(1), HLA-DQB1(2), CTLA4(2), PTPN22(2)
0.109 0.417 5.45e-11 5.58e-10 ✓ sig. Cluster 1 →
Anophthalmia/microphthalmia-esophageal atresia syndrome Nystagmus
6 genes
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4 of 6 corroborated by 2+ sources
TFAP2A(2), ELP4(1), PAX6(2), SIX6(2), C14orf39(1), OTX2(2)
0.095 0.240 5.61e-11 5.74e-10 ✓ sig. —
Clubfoot Congenital clubfoot
4 genes
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4 of 4 corroborated by 2+ sources
CHST14(2), MTHFR(2), PITX1(6), LMX1B(2)
0.154 0.667 5.66e-11 5.79e-10 ✓ sig. Cluster 24 →
Bouillaud’s disease Uveomeningoencephalitic syndrome
3 genes
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0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 1 →
Bouillaud’s disease Pemphigus vulgaris
3 genes
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3 of 3 corroborated by 2+ sources
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 1 →
Bor syndrome Branchiootorenal syndrome
3 genes
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3 of 3 corroborated by 2+ sources
EYA1(6), SIX5(7), SIX1(7)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 145 →
Benign hereditary chorea Bouillaud’s disease
3 genes
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0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 1 →
Early-onset generalized limb-onset dystonia Torsion dystonia
3 genes
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3 of 3 corroborated by 2+ sources
EIF2AK2(3), TOR1A(4), SHQ1(2)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 167 →
Epidermal nevus Schimmelpenning-feuerstein-mims syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KRAS(2), NRAS(4), HRAS(4)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 18 →
Hypoalphalipoproteinemia Hypobetalipoproteinemia
3 genes
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2 of 3 corroborated by 2+ sources
APOB(6), PCSK9(1), ANGPTL3(6)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 140 →
Hypocalcemic vitamin d-dependent rickets Vitamin d dependent rickets
3 genes
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3 of 3 corroborated by 2+ sources
VDR(6), CYP27B1(7), CYP2R1(7)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 396 →
Maple syrup urine disease Thiamine-responsive maple syrup urine disease
3 genes
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3 of 3 corroborated by 2+ sources
BCKDHB(7), BCKDHA(8), DBT(7)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. —
Focal epilepsy Partial epilepsy
4 genes
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4 of 4 corroborated by 2+ sources
DEPDC5(2), CLASP1(2), NPRL2(3), NPRL3(3)
0.089 1.000 5.80e-11 5.90e-10 ✓ sig. —
Amyotrophic lateral sclerosis Charcot-marie-tooth disease
19 genes
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17 of 19 corroborated by 2+ sources
VCP(6), SETX(6), SPG11(7), SPTLC1(5), SIGMAR1(7), NRG1(1), BICD2(1), DCTN1(7), DYNC1H1(5), FIG4(8), IFRD1(2), KIF5A(5) +7 more
0.043 0.144 5.93e-11 6.03e-10 ✓ sig. Cluster 15 →
Allergic contact dermatitis Behcet disease
10 genes
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9 of 10 corroborated by 2+ sources
IL10(4), IL1A(3), IL2(2), IL4(2), TLR4(2), TNF(2), CYP1A1(2), IL18(2), NAT2(1), CCR1(3)
0.059 0.137 6.11e-11 6.21e-10 ✓ sig. Cluster 16 →
Kawasaki disease Sarcoidosis
11 genes
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4 of 11 corroborated by 2+ sources
BTNL2(5), SHANK2(1), TNF(1), HLA-DQB1(2), ZFHX3(1), CCR2(1), LTA(2), IL18(2), CCR5(1), HLA-DOB(1), TSBP1(1)
0.051 0.172 6.11e-11 6.21e-10 ✓ sig. —
Amphetamine or sympathomimetic abuse Dyskinesia, drug-induced
6 genes
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6 of 6 corroborated by 2+ sources
PDYN(2), DRD1(2), DRD2(2), DRD3(2), GAD1(2), GDNF(2)
0.069 0.400 6.19e-11 6.29e-10 ✓ sig. Cluster 13 →
Spondyloepimetaphyseal dysplasia Spondyloepiphyseal dysplasia
5 genes
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5 of 5 corroborated by 2+ sources
ACAN(6), COL2A1(8), TRPV4(6), B3GALT6(6), RPL13(6)
0.128 0.278 6.23e-11 6.32e-10 ✓ sig. Cluster 211 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.