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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hemoglobin m disease Thalassemia
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(3), HBA2(2), HBB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 72 →
Hyperglycinuria Iminoglycinuria
3 genes
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3 of 3 corroborated by 2+ sources
SLC36A2(6), SLC6A19(3), SLC6A20(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. —
Afibrinogenemia Dysfibrinogenemia
3 genes
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3 of 3 corroborated by 2+ sources
FGA(4), FGG(4), FGB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Mitochondrial hepatopathy Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis
3 genes
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2 of 3 corroborated by 2+ sources
POLG(6), TWNK(5), POLGARF(1)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 97 →
Congenital afibrinogenemia Dysfibrinogenemia
3 genes
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3 of 3 corroborated by 2+ sources
FGA(5), FGG(5), FGB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Congenital fibrinogen deficiency Dysfibrinogenemia
3 genes
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3 of 3 corroborated by 2+ sources
FGA(5), FGG(5), FGB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Congenital hypofibrinogenemia Dysfibrinogenemia
3 genes
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3 of 3 corroborated by 2+ sources
FGA(3), FGG(3), FGB(3)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Atopic dermatitis Urticaria
8 genes
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8 of 8 corroborated by 2+ sources
IL1B(2), TNF(2), GSTM1(2), TGFB1(2), IL18(2), HNMT(2), STAT6(3), SELE(2)
0.076 0.174 1.69e-11 1.82e-10 ✓ sig. Cluster 16 →
Autoimmune hepatitis Pleural diseases
5 genes
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5 of 5 corroborated by 2+ sources
IL4(2), IL6(2), TGFB1(2), IFNG(2), CCL2(2)
0.114 0.500 1.74e-11 1.87e-10 ✓ sig. —
Congenital cystic kidney disease Meckel-gruber syndrome
4 genes
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4 of 4 corroborated by 2+ sources
TMEM231(5), KIF14(2), B9D1(5), TXNDC15(5)
0.118 1.000 1.75e-11 1.88e-10 ✓ sig. Cluster 8 →
Cryptospermia Testicular azoospermia
4 genes
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TRIM71(1), DMC1(1), M1AP(1), SYCP2(1)
0.118 1.000 1.75e-11 1.88e-10 ✓ sig. —
Blood coagulation disorder Cor pulmonale
5 genes
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2 of 5 corroborated by 2+ sources
F2(3), ABO(1), SLC19A2(1), F5(3), FGG(1)
0.143 0.333 1.75e-11 1.88e-10 ✓ sig. —
Esophageal squamous cell carcinoma Skin neoplasms
14 genes
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2 of 14 corroborated by 2+ sources
NOTCH2(1), NOTCH1(1), TP53(2), HLA-DQA1(1), HLA-DRB1(1), GSTT1(1), NFE2L2(1), SOD2(1), PTGS2(1), HIF1A(1), KRT17(1), NOTCH3(1) +2 more
0.054 0.109 1.77e-11 1.90e-10 ✓ sig. —
Cataract-microcornea syndrome Lamellar cataract
4 genes
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4 of 4 corroborated by 2+ sources
CRYAA(3), CRYBA4(3), CRYGC(3), CRYGD(3)
0.235 0.444 1.77e-11 1.90e-10 ✓ sig. Cluster 43 →
Aortic stenosis Lipoprotein lipase deficiency
7 genes
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1 of 7 corroborated by 2+ sources
FADS1(1), FADS2(1), LDLR(1), LPL(3), CELSR2(1), MYRF(1), TMEM258(1)
0.083 0.233 1.80e-11 1.94e-10 ✓ sig. —
Anophthalmia Congenital ocular coloboma
5 genes
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1 of 5 corroborated by 2+ sources
RARB(1), ELP4(1), PAX6(1), RAX(2), RBP4(1)
0.139 0.357 1.81e-11 1.94e-10 ✓ sig. —
Diabetic nephropathy type 2 Hypertensive nephropathy
5 genes
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NYAP2(1), TCF7L2(1), FTO(1), HBB(1), PDILT(1)
0.147 0.278 1.82e-11 1.95e-10 ✓ sig. —
Allergic contact dermatitis Rhinitis
9 genes
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8 of 9 corroborated by 2+ sources
MRC1(2), IL10(2), IL2(2), IL4(2), TLR4(1), TNF(2), IFNG(2), CCR2(2), IL18(2)
0.069 0.138 1.88e-11 2.01e-10 ✓ sig. Cluster 16 →
Calcinosis Oral submucous fibrosis
6 genes
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6 of 6 corroborated by 2+ sources
TNF(2), TGFB1(2), MMP9(2), COL1A1(2), TIMP1(2), MMP2(2)
0.098 0.300 1.90e-11 2.04e-10 ✓ sig. —
Congenital myopathy Neuromuscular disease
7 genes
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6 of 7 corroborated by 2+ sources
SCN4A(4), ACTN2(2), ACTA1(7), RYR1(4), LMNA(1), MYH7(5), TTN(3)
0.089 0.175 1.94e-11 2.07e-10 ✓ sig. Cluster 189 →
Brain ischemia Nervous system disease
9 genes
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9 of 9 corroborated by 2+ sources
TP53(2), BDNF(2), CASP3(2), MTHFR(2), TNF(2), PTGS2(2), SOD1(2), CSF3(2), CASP9(2)
0.069 0.132 1.94e-11 2.07e-10 ✓ sig. —
Leber congenital amaurosis Nystagmus
8 genes
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5 of 8 corroborated by 2+ sources
CNGB3(1), GUCY2D(6), RPGRIP1(6), RPE65(6), NMNAT1(6), OTX2(1), CEP290(6), MKS1(1)
0.074 0.186 1.95e-11 2.08e-10 ✓ sig. Cluster 7 →
Congenital generalized lipodystrophy Lipodystrophy
4 genes
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4 of 4 corroborated by 2+ sources
CAV1(7), BSCL2(7), CAVIN1(7), AGPAT2(7)
0.190 0.667 1.96e-11 2.09e-10 ✓ sig. Cluster 71 →
Nuclear cataract Sutural cataract
4 genes
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4 of 4 corroborated by 2+ sources
CRYBB2(2), GJA8(3), MIP(2), CRYBA1(2)
0.190 0.667 1.96e-11 2.09e-10 ✓ sig. Cluster 43 →
Gouty arthritis Hyperuricemia
6 genes
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6 of 6 corroborated by 2+ sources
SLC2A9(3), TGFB1(2), XDH(2), ABCG2(5), ALDH16A1(2), SLC17A3(4)
0.081 0.400 1.97e-11 2.10e-10 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.