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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cancer Ovarian cancer
198 genes
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ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(1), SH2B3(1), RTEL1(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1) +186 more
0.374 0.759 1.63e-261 1.38e-258 ✓ sig. Cluster 21 →
Psoriasis Sclerosing cholangitis
206 genes
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21 of 206 corroborated by 2+ sources
SH2B3(1), NOTCH1(1), IFIH1(3), ANKRD55(1), BANK1(2), BSN(1), CDKAL1(1), EMSY(1), ERN1(1), ETS1(1), FAM177A1(1), FIBP(1) +194 more
0.272 0.896 1.03e-254 8.38e-252 ✓ sig. Cluster 14 →
Sclerosing cholangitis Ulcerative colitis
198 genes
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24 of 198 corroborated by 2+ sources
SH2B3(1), NOTCH1(1), IFIH1(1), ANKRD55(1), BANK1(1), BSN(1), CDKAL1(1), EMSY(1), ERN1(1), ETS1(1), FAM177A1(1), FIBP(1) +186 more
0.307 0.861 1.60e-254 1.26e-251 ✓ sig. Cluster 14 →
Ankylosing spondylitis Psoriasis
232 genes
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35 of 232 corroborated by 2+ sources
SH2B3(1), NOTCH1(1), IFIH1(3), ADGRL2(1), ANKRD55(1), ATXN2L(1), BANK1(2), BSN(1), CDKAL1(1), DAG1(1), EMSY(1), ERN1(1) +220 more
0.285 0.741 1.06e-249 8.09e-247 ✓ sig. Cluster 14 →
Ankylosing spondylitis Crohn disease
228 genes
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44 of 228 corroborated by 2+ sources
SH2B3(1), NOTCH1(1), IFIH1(1), ADGRL2(1), ANKRD55(1), ATXN2L(1), BANK1(1), BSN(1), CDKAL1(1), DAG1(1), EMSY(1), ERN1(1) +216 more
0.294 0.728 7.26e-249 5.34e-246 ✓ sig. Cluster 14 →
Major depressive disorder Schizophrenia
905 genes
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308 of 905 corroborated by 2+ sources
SOX5(2), PAFAH1B1(2), HNF1B(1), KANSL1(1), RERE(1), COMT(3), HDAC4(2), WWOX(2), ZFPM2(1), SMARCAD1(1), COL2A1(1), PDE4D(1) +893 more
0.252 0.462 1.92e-248 1.36e-245 ✓ sig. Cluster 2 →
Crohn disease Sclerosing cholangitis
200 genes
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29 of 200 corroborated by 2+ sources
SH2B3(1), NOTCH1(1), IFIH1(1), ANKRD55(1), BANK1(1), BSN(1), CDKAL1(1), EMSY(1), ERN1(1), ETS1(1), FAM177A1(1), FIBP(1) +188 more
0.277 0.870 1.10e-246 7.55e-244 ✓ sig. Cluster 14 →
Attention deficit hyperactivity disorder Autism
499 genes
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130 of 499 corroborated by 2+ sources
SOX5(3), RAI1(3), NFIX(1), NFIA(1), RERE(2), FGF8(1), COMT(2), JMJD1C(3), HDAC4(1), ZFPM2(1), ATP2A2(1), BRWD1(2) +487 more
0.241 0.452 2.00e-238 1.33e-235 ✓ sig. Cluster 2 →
Deafness Isolated sensorineural deafness
114 genes
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110 of 114 corroborated by 2+ sources
CEACAM16(3), CLIC5(3), COL11A1(2), ESRRB(3), EYA4(3), GIPC3(3), GRAP(2), LMX1A(3), MYO15A(3), NARS2(2), OTOF(3), OTOGL(3) +102 more
0.640 0.958 1.05e-236 6.83e-234 ✓ sig. Cluster 31 →
Biliary tract cancer Non-hodgkins lymphoma
108 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +96 more
0.740 0.915 1.96e-236 1.23e-233 ✓ sig. Cluster 72 →
Juvenile arthritis Juvenile idiopathic arthritis
127 genes
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127 of 127 corroborated by 2+ sources
RERE(2), GP1BB(2), JMJD1C(2), WWOX(3), ETV6(2), ASAP1(2), AVL9(2), CAMSAP1(2), CLU(2), FOXP1(3), GMPR(2), HBEGF(2) +115 more
0.470 0.977 1.22e-234 7.44e-232 ✓ sig. Cluster 320 →
Intellectual developmental disorder Neurodevelopmental disorder
354 genes
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263 of 354 corroborated by 2+ sources
CHD8(5), FOXG1(2), UBE3A(1), CHRNA7(2), SIN3A(2), USP7(1), ANKRD11(2), RAI1(2), BPTF(4), PSMD12(1), NFIX(1), SKI(1) +342 more
0.254 0.438 2.71e-231 1.62e-228 ✓ sig. Cluster 6 →
Cancer Lung cancer
199 genes
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1 of 199 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(1), SH2B3(1), RTEL1(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1) +187 more
0.279 0.762 1.61e-228 9.36e-226 ✓ sig. Cluster 21 →
Biliary tract cancer Esophageal cancer
108 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +96 more
0.643 0.915 1.50e-223 8.50e-221 ✓ sig. Cluster 72 →
Coronary artery disease Myocardial infarction
325 genes
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92 of 325 corroborated by 2+ sources
CYP17A1(1), RAI1(1), PRDM16(3), SKI(1), ZFPM2(1), APOA1(2), SH2B3(3), TP53(1), SERPINA1(1), COL4A4(1), ABCG8(3), ACE(2) +313 more
0.232 0.560 1.90e-223 1.05e-220 ✓ sig. Cluster 34 →
Lung cancer Ovarian serous carcinoma
199 genes
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1 of 199 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(1), PDE4D(1), SH2B3(1), RTEL1(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1) +187 more
0.276 0.737 3.04e-223 1.63e-220 ✓ sig. Cluster 21 →
Isolated sensorineural deafness Nonsyndromic hearing loss
101 genes
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75 of 101 corroborated by 2+ sources
CEACAM16(3), CLIC5(3), COL11A1(3), ESRRB(3), EYA4(3), GIPC3(2), LMX1A(4), MACF1(2), MYO15A(3), MYO1C(2), OTOF(1), OTOGL(1) +89 more
0.737 0.856 1.93e-222 1.01e-219 ✓ sig. Cluster 31 →
Estrogen-receptor negative breast cancer Lung cancer
205 genes
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2 of 205 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(1), SH2B3(1), RTEL1(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1) +193 more
0.277 0.693 5.94e-221 3.05e-218 ✓ sig. Cluster 21 →
Esophageal cancer Gastric cancer
126 genes
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1 of 126 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), CHEK2(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1) +114 more
0.504 0.803 7.61e-221 3.81e-218 ✓ sig. Cluster 72 →
Biliary tract cancer Endometrial cancer
108 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +96 more
0.584 0.915 9.11e-216 4.46e-213 ✓ sig. Cluster 72 →
Crohn disease Psoriasis
289 genes
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54 of 289 corroborated by 2+ sources
SH2B3(1), NOTCH1(1), IFIH1(3), BLTP1(1), ADGRL2(1), ANKRD55(1), ATXN2L(1), BANK1(2), BSN(1), BTNL2(1), CDKAL1(1), CSMD1(3) +277 more
0.255 0.419 7.25e-214 3.47e-211 ✓ sig. Cluster 14 →
Deafness Nonsyndromic hearing loss
107 genes
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106 of 107 corroborated by 2+ sources
CEACAM16(5), CLIC5(5), COL11A1(4), ESRRB(5), EYA4(4), GIPC3(4), LMX1A(6), MYO15A(4), OTOF(3), OTOGL(3), PCDH15(5), THOC1(3) +95 more
0.582 0.907 2.99e-213 1.40e-210 ✓ sig. Cluster 31 →
Fatty liver Fatty liver, alcoholic
84 genes
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75 of 84 corroborated by 2+ sources
INS(2), MTTP(2), CAT(2), PTEN(2), SCD(1), APOB(2), APOE(2), ATP7B(2), CYCS(2), F2R(2), FGF21(2), GPX4(2) +72 more
0.875 0.977 2.61e-210 1.20e-207 ✓ sig. —
Esophageal cancer Non-hodgkins lymphoma
108 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +96 more
0.584 0.800 2.73e-209 1.23e-206 ✓ sig. Cluster 72 →
Estrogen-receptor negative breast cancer Squamous cell carcinoma
209 genes
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8 of 209 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(1), SH2B3(1), RTEL1(1), TERT(1), TP53(2), ARHGEF10L(1), ASIP(1), BAD(1) +197 more
0.238 0.706 6.80e-208 3.00e-205 ✓ sig. Cluster 21 →

Showing 25 of 22038 pairs, sorted by significance (ascending). Click a column header to sort.