Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cone-rod dystrophy Retinitis pigmentosa
64 genes
Show details
62 of 64 corroborated by 2+ sources
ABCA4(7), ATF6(4), CNGA3(4), CNGB3(2), PDE6C(2), ACBD5(2), ADAM9(5), IMPG1(4), IMPG2(5), PRPH2(7), AIPL1(5), CACNA1F(3) +52 more
0.174 0.865 3.21e-96 3.32e-94 ✓ sig. Cluster 7 →
Global developmental delay Neurodevelopmental disorder
159 genes
Show details
100 of 159 corroborated by 2+ sources
FOXG1(2), UBE3A(1), ANKRD11(2), BPTF(4), NFIX(1), SHANK3(1), PTEN(2), ADNP(2), VCP(2), ATRX(1), ATP1A3(2), ARID1B(2) +147 more
0.138 0.430 3.59e-96 3.70e-94 ✓ sig. Cluster 5 →
Growth hormone deficiency Panhypopituitarism
34 genes
Show details
FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.773 1.000 7.30e-96 7.42e-94 ✓ sig. Cluster 53 →
Panhypopituitarism Sheehan syndrome
34 genes
Show details
FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.773 1.000 7.30e-96 7.42e-94 ✓ sig. Cluster 53 →
Panhypopituitarism Pituitary short stature
34 genes
Show details
FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.773 1.000 7.30e-96 7.42e-94 ✓ sig. Cluster 53 →
Eczema Psoriasis
143 genes
Show details
21 of 143 corroborated by 2+ sources
RERE(1), IFIH1(3), BLTP1(1), ANKRD55(1), ANO3(1), CSMD1(3), EBF1(1), ELMO1(1), EMSY(1), ERBB3(1), ETS1(1), FAM177A1(1) +131 more
0.150 0.392 3.37e-95 3.40e-93 ✓ sig. —
Kallmann syndrome Panhypopituitarism
35 genes
Show details
22 of 35 corroborated by 2+ sources
FGF8(3), DUSP6(3), HESX1(2), IL17RD(3), PROK2(4), TACR3(2), PROKR2(3), TCF12(2), GH1(1), CHD7(4), FGFR1(4), WDR11(3) +23 more
0.745 0.921 3.60e-95 3.62e-93 ✓ sig. Cluster 53 →
Hereditary motor and sensory neuropathies Peroneal muscle atrophy
38 genes
Show details
2 of 38 corroborated by 2+ sources
DHTKD1(1), AARS1(1), VCP(1), SLC12A6(1), EGR2(1), KIF1B(1), MME(1), TRPV4(3), DYNC1H1(1), FIG4(1), MFN2(4), NEFL(1) +26 more
0.559 0.974 5.47e-95 5.48e-93 ✓ sig. Cluster 12 →
Asthma Eczema
165 genes
Show details
28 of 165 corroborated by 2+ sources
RERE(1), CEBPA(1), RTEL1(1), BLTP1(1), CARD11(2), CCR7(1), CSMD1(1), EMSY(1), ERBB3(1), ETS1(1), FADS1(1), FADS2(1) +153 more
0.130 0.452 6.56e-95 6.53e-93 ✓ sig. Cluster 245 →
Attention deficit hyperactivity disorder Tourette syndrome
142 genes
Show details
9 of 142 corroborated by 2+ sources
SOX5(2), RERE(1), ATP2A2(1), AKAP6(1), ANK3(2), BANK1(1), BRAF(1), C8orf90(1), CACNB2(1), CAMTA1(1), CSMD1(1), CTNND1(1) +130 more
0.116 0.550 1.69e-94 1.67e-92 ✓ sig. —
Hypopituitarism Sheehan syndrome
34 genes
Show details
FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.723 1.000 5.04e-94 4.93e-92 ✓ sig. Cluster 53 →
Hypopituitarism Pituitary short stature
34 genes
Show details
FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.723 1.000 5.04e-94 4.93e-92 ✓ sig. Cluster 53 →
Growth hormone deficiency Hypopituitarism
34 genes
Show details
FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.723 1.000 5.04e-94 4.93e-92 ✓ sig. Cluster 53 →
Bipolar disorder Obsessive-compulsive disorder
140 genes
Show details
30 of 140 corroborated by 2+ sources
SOX5(1), RERE(1), COMT(2), ATP2A2(1), AKAP6(1), BANK1(1), BRAF(1), C6orf118(1), C8orf90(1), CACNA2D3(1), CACNB2(2), COA8(1) +128 more
0.106 0.598 5.29e-94 5.14e-92 ✓ sig. —
Alzheimer disease Gastroesophageal reflux disease
189 genes
Show details
12 of 189 corroborated by 2+ sources
WT1(2), APP(6), ABAT(3), ABCG8(1), ABI3(2), ACE(2), ADAMTS18(1), ADARB1(1), ADGRB3(1), ADGRL2(1), AFF3(1), AKAP6(1) +177 more
0.082 0.677 1.57e-93 1.52e-91 ✓ sig. Cluster 2 →
Growth hormone deficiency Hypogonadotropic hypogonadism
34 genes
Show details
30 of 34 corroborated by 2+ sources
FGF8(5), DUSP6(5), IL17RD(4), PROK2(6), TACR3(6), PROKR2(7), TCF12(4), GH1(1), CHD7(5), FGFR1(5), WDR11(5), SEMA3E(4) +22 more
0.708 1.000 1.82e-93 1.74e-91 ✓ sig. Cluster 53 →
Hypogonadotropic hypogonadism Pituitary short stature
34 genes
Show details
30 of 34 corroborated by 2+ sources
FGF8(5), DUSP6(5), IL17RD(4), PROK2(6), TACR3(6), PROKR2(7), TCF12(4), GH1(1), CHD7(5), FGFR1(5), WDR11(5), SEMA3E(4) +22 more
0.708 1.000 1.82e-93 1.74e-91 ✓ sig. Cluster 53 →
Hypogonadotropic hypogonadism Sheehan syndrome
34 genes
Show details
30 of 34 corroborated by 2+ sources
FGF8(5), DUSP6(5), IL17RD(4), PROK2(6), TACR3(6), PROKR2(7), TCF12(4), GH1(1), CHD7(5), FGFR1(5), WDR11(5), SEMA3E(4) +22 more
0.708 1.000 1.82e-93 1.74e-91 ✓ sig. Cluster 53 →
Amyotrophic lateral sclerosis Motor neuron disease
61 genes
Show details
55 of 61 corroborated by 2+ sources
CST3(2), GFAP(2), ALS2(7), BCL2L1(2), CLU(2), LAT(2), LDLR(2), OPTN(7), SETX(6), TIAM1(3), CTSD(2), PON1(4) +49 more
0.178 0.859 2.75e-93 2.62e-91 ✓ sig. Cluster 12 →
Clear cell renal cell carcinoma Kidney cancer
43 genes
Show details
TERT(1), CDKAL1(1), COL25A1(1), FANCD2(1), MAD1L1(1), SCARB1(1), TLN2(1), INSR(1), AKT1(1), AP3D1(1), MYEOV(1), SSPN(1) +31 more
0.457 0.782 4.35e-93 4.12e-91 ✓ sig. —
Kidney disease Kidney failure
101 genes
Show details
43 of 101 corroborated by 2+ sources
INS(2), A4GALT(1), CST3(3), GATM(3), COL4A3(1), COL4A4(1), ACE(2), AGT(2), CHRM3(1), CLU(2), COL6A3(2), CPS1(1) +89 more
0.175 0.402 6.97e-93 6.57e-91 ✓ sig. Cluster 6 →
Hypogonadotropic hypogonadism Kallmann syndrome
35 genes
Show details
30 of 35 corroborated by 2+ sources
FGF8(6), DUSP6(6), IL17RD(5), PROK2(8), TACR3(7), PROKR2(8), PNPLA6(1), TCF12(4), GH1(1), CHD7(6), FGFR1(6), WDR11(6) +23 more
0.686 0.921 1.30e-92 1.22e-90 ✓ sig. Cluster 53 →
Celiac disease Diabetes mellitus type 1
95 genes
Show details
33 of 95 corroborated by 2+ sources
SH2B3(3), BLTP1(1), ACE(2), ADGRL2(1), AFF3(1), ANKRD55(1), ATXN2L(1), BTNL2(1), CTSH(3), DAG1(1), ETS1(3), FUT2(1) +83 more
0.165 0.492 1.56e-92 1.45e-90 ✓ sig. Cluster 39 →
Basal cell carcinoma Non-melanoma skin carcinoma
81 genes
Show details
11 of 81 corroborated by 2+ sources
ANKRD11(1), TP53(3), ASIP(2), ATP8B4(1), BNC2(2), CUX1(1), EPB41L1(1), FADS2(1), FARP1(2), FOXP1(1), GABBR1(1), GPX4(1) +69 more
0.195 0.479 7.31e-92 6.80e-90 ✓ sig. Cluster 23 →
Deafness Hereditary hearing loss
47 genes
Show details
47 of 47 corroborated by 2+ sources
ESRRB(4), EYA4(4), MYO15A(4), OTOF(4), PCDH15(4), TMC1(4), HGF(4), RDX(4), GSDME(4), DIAPH1(4), MYO1A(3), GJB6(5) +35 more
0.267 0.940 3.60e-91 3.33e-89 ✓ sig. Cluster 20 →

Showing 25 of 20825 pairs, sorted by significance (ascending). Click a column header to sort.