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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cutaneous squamous cell carcinoma Erythematosquamous dermatosis
6 genes
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FOXP1(1), RALY(1), IRF4(1), TYR(1), MC1R(1), SLC45A2(1)
0.109 0.273 1.08e-11 1.18e-10 ✓ sig. —
Cholangiocarcinoma Nasopharyngeal carcinoma
6 genes
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1 of 6 corroborated by 2+ sources
PTEN(1), TP53(3), ARID1A(1), KRAS(1), ERBB2(1), BAP1(1)
0.109 0.273 1.08e-11 1.18e-10 ✓ sig. —
monogenic diabetes Transient neonatal diabetes mellitus
4 genes
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4 of 4 corroborated by 2+ sources
INS(3), ABCC8(7), KCNJ11(6), GCK(3)
0.250 0.444 1.13e-11 1.23e-10 ✓ sig. Cluster 36 →
Pulmonary fibrosis Pulmonary hypertension
10 genes
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10 of 10 corroborated by 2+ sources
ACE(2), TNF(2), CAV1(5), CXCL8(2), CCL2(2), ACE2(2), EDN1(2), CALCA(2), TGFA(2), ABCA3(2)
0.063 0.164 1.15e-11 1.25e-10 ✓ sig. —
Arthrogryposis multiplex congenita Digitotalar dysmorphism
5 genes
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4 of 5 corroborated by 2+ sources
MYH3(1), TPM2(2), NALCN(2), TNNI2(2), TNNT3(2)
0.068 0.833 1.16e-11 1.27e-10 ✓ sig. —
Appendiceal disorder Appendicitis
4 genes
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MND1(1), TMEM131L(1), FFAR2(1), KRTDAP(1)
0.129 1.000 1.17e-11 1.28e-10 ✓ sig. —
Atrophic macular degeneration Retinopathy
8 genes
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1 of 8 corroborated by 2+ sources
CFI(1), C2(1), C3(1), CETP(1), CFH(1), RDH5(1), ARMS2(1), RPGR(6)
0.079 0.154 1.21e-11 1.32e-10 ✓ sig. Cluster 187 →
Ovarian neoplasms Renal cell carcinoma
14 genes
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1 of 14 corroborated by 2+ sources
PTEN(1), TP53(1), SOD2(1), IL6(1), ALOX5(1), TNFSF10(1), MET(5), ERBB2(1), SLC2A1(1), ALOX12B(1), PIK3CA(1), BAP1(1) +2 more
0.054 0.107 1.22e-11 1.33e-10 ✓ sig. Cluster 5 →
Androgenetic alopecia Colorectal cancer
64 genes
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3 of 64 corroborated by 2+ sources
KANSL1(1), RREB1(1), HDAC4(1), FGFR3(3), BORCS5(1), CCDC91(1), CYRIB(1), EBF1(1), FADS2(1), FMN1(1), GLIS3(1), HDAC9(1) +52 more
0.048 0.157 1.23e-11 1.34e-10 ✓ sig. Cluster 20 →
Ciliopathy Senior-loken syndrome
6 genes
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6 of 6 corroborated by 2+ sources
WDR19(6), SCLT1(2), SDCCAG8(5), IQCB1(7), CEP164(2), TRAF3IP1(6)
0.076 0.462 1.30e-11 1.41e-10 ✓ sig. Cluster 8 →
Hereditary atrial fibrillation Ventricular fibrillation
6 genes
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6 of 6 corroborated by 2+ sources
KCNE2(3), KCNJ2(2), NKX2-5(2), SCN5A(4), TTN(2), SCN1B(2)
0.109 0.250 1.38e-11 1.50e-10 ✓ sig. Cluster 4 →
Diffuse cutaneous systemic sclerosis Systemic scleroderma
5 genes
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2 of 5 corroborated by 2+ sources
HLA-DPB1(1), IRF5(3), STAT4(2), TNPO3(1), HLA-DPA1(1)
0.147 0.333 1.39e-11 1.51e-10 ✓ sig. Cluster 25 →
Hereditary breast cancer Rhabdomyosarcoma
6 genes
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6 of 6 corroborated by 2+ sources
MSH2(2), MSH6(2), NBN(2), PMS2(3), SLC67A1(4), MLH1(2)
0.111 0.222 1.41e-11 1.53e-10 ✓ sig. —
Hemochromatosis Hereditary hemochromatosis
4 genes
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4 of 4 corroborated by 2+ sources
TFR2(6), HFE(6), HAMP(6), SLC40A1(5)
0.222 0.571 1.49e-11 1.62e-10 ✓ sig. Cluster 135 →
Hereditary breast cancer Muir-torre syndrome
4 genes
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4 of 4 corroborated by 2+ sources
MSH2(5), MSH6(2), PMS2(2), MLH1(5)
0.121 1.000 1.54e-11 1.67e-10 ✓ sig. —
Hereditary breast cancer mismatch repair cancer syndrome 1
4 genes
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MSH2(1), MSH6(1), PMS2(1), MLH1(1)
0.121 1.000 1.54e-11 1.67e-10 ✓ sig. —
Congenital malformation syndromes predominantly affecting facial appearance Orofaciodigital syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.121 1.000 1.54e-11 1.67e-10 ✓ sig. —
Orofaciodigital syndrome Warburg micro syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.121 1.000 1.54e-11 1.67e-10 ✓ sig. —
Cerebellar atrophy Congenital pes cavus
5 genes
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DYNC1H1(1), HARS1(1), SMC1A(1), BIVM-ERCC5(1), ERCC5(1)
0.132 0.417 1.55e-11 1.68e-10 ✓ sig. —
Hemophilia a Venous thrombosis
5 genes
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5 of 5 corroborated by 2+ sources
F2(2), MTHFR(2), PLAT(2), F8(6), TFPI(2)
0.147 0.313 1.58e-11 1.71e-10 ✓ sig. Cluster 55 →
Endometriosis Hypertension
67 genes
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25 of 67 corroborated by 2+ sources
MAP3K1(1), SRD5A2(3), GATA4(1), PTEN(3), RUNX1(1), ASCC1(1), C6orf118(1), CAMK1D(1), CLIC4(1), COL12A1(1), DIO2(2), ESR2(2) +55 more
0.046 0.178 1.62e-11 1.75e-10 ✓ sig. Cluster 78 →
Dysfibrinogenemia Hypofibrinogenemia
3 genes
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3 of 3 corroborated by 2+ sources
FGA(5), FGG(5), FGB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Cerebral thrombosis Intracranial thrombosis
3 genes
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3 of 3 corroborated by 2+ sources
PLAT(2), SERPINC1(2), VWF(2)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 266 →
Chilblain lupus Chilblain lupus erythematosus
3 genes
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3 of 3 corroborated by 2+ sources
SAMHD1(7), TREX1(7), STING1(3)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 150 →
Thalassemia Unstable hemoglobin disease
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(3), HBA2(3), HBB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 72 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.