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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Adenoid cystic carcinoma Urinary bladder neoplasms
13 genes
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TP53(1), ARID1A(1), KMT2C(1), CREBBP(1), CDH1(1), ATM(1), SMC1A(1), KDM6A(1), HRAS(1), EP300(1), FANCA(1), CCND1(1) +1 more
0.057 0.130 7.17e-12 7.95e-11 ✓ sig. —
Kidney cancer Myeloproliferative disorder
9 genes
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2 of 9 corroborated by 2+ sources
TERT(2), TP53(2), MAD1L1(1), ATM(1), RBPMS(1), STN1(1), PMF1(1), PMF1-BGLAP(1), MYNN(1)
0.071 0.170 7.18e-12 7.96e-11 ✓ sig. —
mismatch repair cancer syndrome 1 Rhabdomyosarcoma
4 genes
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4 of 4 corroborated by 2+ sources
MSH2(2), MSH6(2), PMS2(3), MLH1(2)
0.143 1.000 7.50e-12 8.30e-11 ✓ sig. Cluster 166 →
Muir-torre syndrome Rhabdomyosarcoma
4 genes
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3 of 4 corroborated by 2+ sources
MSH2(5), MSH6(1), PMS2(3), MLH1(5)
0.143 1.000 7.50e-12 8.30e-11 ✓ sig. Cluster 166 →
Age-related macular degeneration Retinopathy
9 genes
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6 of 9 corroborated by 2+ sources
ABCA4(3), CFI(4), COL4A4(1), C2(3), C3(3), CETP(1), CFH(3), RDH5(1), ARMS2(3)
0.071 0.173 7.50e-12 8.30e-11 ✓ sig. Cluster 187 →
Autoimmune hepatitis Lupus nephritis
7 genes
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4 of 7 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(1), HLA-DQB1(2), IFNG(2), CCL2(2), CTLA4(1), PDCD1(1)
0.095 0.184 7.87e-12 8.71e-11 ✓ sig. —
Edema Hyperalgesia
9 genes
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TNF(1), IL6(1), TAC1(1), PTGS2(1), KNG1(1), PTHLH(1), CXCL8(1), VIP(1), CALCA(1)
0.069 0.184 8.09e-12 8.95e-11 ✓ sig. Cluster 13 →
Jeune thoracic dystrophy Saldino-noonan syndrome
5 genes
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NEK1(1), DYNC2H1(1), DYNC2I1(1), DYNC2I2(1), DYNLT2B(1)
0.128 0.500 8.23e-12 9.09e-11 ✓ sig. Cluster 22 →
Craniodiaphyseal dysplasia Jeune thoracic dystrophy
5 genes
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5 of 5 corroborated by 2+ sources
IFT43(5), IFT140(2), IFT52(2), WDR19(6), WDR35(6)
0.128 0.500 8.23e-12 9.09e-11 ✓ sig. Cluster 22 →
Hereditary motor and sensory neuropathies Sensory neuropathy
6 genes
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WNK1(1), KIF1A(1), MPZ(1), GDAP1(1), GJB1(1), RETREG1(1)
0.081 0.462 8.24e-12 9.09e-11 ✓ sig. —
Leukemia Myeloid leukemia
10 genes
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3 of 10 corroborated by 2+ sources
WT1(1), CHEK2(2), ERG(1), JAK2(3), DNMT3A(3), TNFSF10(1), AQP9(1), PTPN11(1), KMT2A(1), KMT2E(1)
0.054 0.233 8.28e-12 9.14e-11 ✓ sig. Cluster 53 →
Neuroblastoma Urinary bladder neoplasms
15 genes
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2 of 15 corroborated by 2+ sources
TERT(1), TP53(2), ARID1A(1), ESR1(1), TNF(1), KRAS(1), MMP9(1), IFNB1(1), MYC(1), AQP3(2), ISL1(1), CDKN2A(1) +3 more
0.054 0.106 8.69e-12 9.58e-11 ✓ sig. Cluster 5 →
Ischemic stroke Thrombophilia
7 genes
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7 of 7 corroborated by 2+ sources
F2(6), MTHFR(3), PLAT(4), F5(6), PROC(5), PROS1(5), THBD(3)
0.091 0.219 9.00e-12 9.92e-11 ✓ sig. Cluster 55 →
Differentiated thyroid carcinoma Toxic nodular goiter
6 genes
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1 of 6 corroborated by 2+ sources
NFIA(1), TERT(2), NRG1(1), SLK(1), STN1(1), MBIP(1)
0.098 0.353 9.11e-12 1.00e-10 ✓ sig. —
Myopathy Neuromuscular disease
9 genes
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2 of 9 corroborated by 2+ sources
SCN4A(1), ACTA1(1), RAPSN(2), RYR1(3), MYH7(1), TTN(1), MSTO1(1), EMD(1), GGPS1(1)
0.063 0.225 9.31e-12 1.03e-10 ✓ sig. —
Congenital neurologic anomalies Intellectual disability
11 genes
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7 of 11 corroborated by 2+ sources
FOXG1(1), ANK3(2), AP4M1(2), CRBN(2), TUSC3(2), CTNNB1(3), TMEM67(1), AP4B1(2), AP4E1(2), NALCN(1), TSC2(1)
0.061 0.145 9.44e-12 1.04e-10 ✓ sig. Cluster 6 →
Anemia Lymphoma
9 genes
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8 of 9 corroborated by 2+ sources
MTHFR(2), PON1(2), CSF2(2), EPHX1(2), CSF3(2), IFNA2(1), KRAS(2), NRAS(2), TYMS(2)
0.070 0.170 1.00e-11 1.11e-10 ✓ sig. —
Catecholaminergic polymorphic ventricular tachycardia Paroxysmal familial ventricular fibrillation
4 genes
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2 of 4 corroborated by 2+ sources
DSP(1), LMNA(1), RYR2(7), SCN5A(2)
0.182 0.800 1.03e-11 1.14e-10 ✓ sig. Cluster 4 →
Costello syndrome Epidermal nevus
4 genes
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3 of 4 corroborated by 2+ sources
KRAS(3), NRAS(5), HRAS(6), LRRC56(1)
0.235 0.571 1.07e-11 1.17e-10 ✓ sig. —
Basal ganglia disease Fahr's disease
4 genes
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4 of 4 corroborated by 2+ sources
PDGFRB(2), XPR1(2), PDGFB(2), SLC20A2(2)
0.235 0.571 1.07e-11 1.17e-10 ✓ sig. Cluster 390 →
Oculocutaneous albinism Skin hair eye pigmentation variation
4 genes
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4 of 4 corroborated by 2+ sources
OCA2(7), SLC45A2(6), SLC24A5(4), TYRP1(4)
0.235 0.571 1.07e-11 1.17e-10 ✓ sig. Cluster 298 →
Hypercalcemia Osteolysis
4 genes
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4 of 4 corroborated by 2+ sources
TNF(2), PTHLH(2), TNFRSF11B(2), TNFSF11(2)
0.235 0.571 1.07e-11 1.17e-10 ✓ sig. Cluster 262 →
Non-immune hydrops fetalis Noonan syndrome
7 genes
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6 of 7 corroborated by 2+ sources
KRAS(8), SHOC2(7), PTPN11(7), LZTR1(7), HRAS(3), RIT1(6), LRRC56(1)
0.092 0.189 1.08e-11 1.18e-10 ✓ sig. Cluster 42 →
Melanocytic nevus Seborrheic keratosis
5 genes
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TYR(1), DEF8(1), CASP8(1), FLACC1(1), SLC45A2(1)
0.132 0.455 1.08e-11 1.18e-10 ✓ sig. —
Congenital ear anomaly Retinitis pigmentosa-deafness syndrome
5 genes
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PCDH15(1), USH2A(1), CDH23(1), MYO7A(1), C10orf105(1)
0.132 0.455 1.08e-11 1.18e-10 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.