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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
46,xy sex reversal Swyer syndrome
6 genes
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5 of 6 corroborated by 2+ sources
NR5A1(1), SRY(2), CBX2(2), DHX37(2), MAP3K1(2), NR0B1(2)
0.500 0.857 7.95e-20 1.50e-18 ✓ sig. Cluster 38 →
Coronary artery disease Osteoarthritis
126 genes
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36 of 126 corroborated by 2+ sources
SOX5(1), NFIA(1), COL2A1(2), SERPINA1(1), ADARB2(1), ALDH1A2(2), APOC1(1), APOE(3), ARHGAP15(1), BCAS3(1), BLTP3A(1), BNC2(1) +114 more
0.072 0.173 9.20e-20 1.74e-18 ✓ sig. —
Intrahepatic cholestasis of pregnancy Liver disease
12 genes
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5 of 12 corroborated by 2+ sources
SERPINA1(3), ABCG8(1), TNF(2), GCKR(1), ABCB1(1), NR1H4(3), HNF4A(1), CYP7A1(1), ABCB11(2), ABCB4(4), UBXN2B(1), ENPP7(1)
0.072 0.600 9.68e-20 1.83e-18 ✓ sig. —
Amphetamine or sympathomimetic abuse Substance-induced psychosis
10 genes
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10 of 10 corroborated by 2+ sources
GSTP1(2), HTR6(2), SNCA(2), ADORA2A(2), AKT1(2), GRM2(2), NPY1R(2), OPRM1(2), PICK1(2), SLC6A3(2)
0.118 0.588 1.01e-19 1.90e-18 ✓ sig. Cluster 13 →
Crigler-najjar syndrome Gallstones
9 genes
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9 of 9 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A1(7), UGT1A6(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.072 1.000 1.06e-19 2.00e-18 ✓ sig. —
Muscle eye brain disease Muscular dystrophy
9 genes
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9 of 9 corroborated by 2+ sources
DAG1(2), GMPPB(3), LARGE1(2), CRPPA(2), POMT1(3), POMT2(3), POMGNT1(3), FKRP(3), FKTN(3)
0.155 0.600 1.12e-19 2.11e-18 ✓ sig. Cluster 14 →
Cholelithiasis Pulmonary fibrosis
19 genes
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19 of 19 corroborated by 2+ sources
CAT(2), SERPINA1(2), AGT(2), SERPINE1(2), IGF1(2), IL1B(2), NFE2L2(2), TNF(2), IL6(2), HMGB1(2), TGFB1(2), ACTA2(2) +7 more
0.083 0.178 1.12e-19 2.11e-18 ✓ sig. —
Epidermolysis bullosa Junctional epidermolysis bullosa
8 genes
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8 of 8 corroborated by 2+ sources
COL7A1(6), PLEC(8), LAMB3(6), KRT5(7), ITGB4(7), ITGA6(7), KRT14(7), KLHL24(6)
0.250 0.444 1.13e-19 2.12e-18 ✓ sig. —
Central nervous system cancer Scoliosis
110 genes
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3 of 110 corroborated by 2+ sources
AKAP6(1), ANK3(1), ANO4(1), C6orf118(1), CDKAL1(1), CSMD1(1), CTNNA3(1), DCC(1), DGKB(1), EGFR(1), EPHA4(1), FKBP1C(1) +98 more
0.070 0.168 1.15e-19 2.15e-18 ✓ sig. —
Spastic ataxia Spastic paraplegia
16 genes
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15 of 16 corroborated by 2+ sources
SETX(1), SPG11(4), PNPLA6(4), CYP7B1(4), VAMP1(5), KIF1C(5), SACS(3), SPG7(4), SPAST(4), KIF1A(5), AMPD2(4), FA2H(4) +4 more
0.091 0.229 1.15e-19 2.16e-18 ✓ sig. —
Atrophic macular degeneration Glaucoma
18 genes
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1 of 18 corroborated by 2+ sources
CFI(1), ABCA1(1), ALDH1A2(1), APOE(2), C2(1), C3(1), RAD51B(1), CFB(1), TGFBR1(1), SYN3(1), CETP(1), CFH(1) +6 more
0.066 0.321 1.23e-19 2.31e-18 ✓ sig. —
Aortic dissection Thoracic aortic aneurysm and aortic dissection
9 genes
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7 of 9 corroborated by 2+ sources
FBN1(5), SMAD3(6), COL1A1(2), FOXE3(5), COL3A1(1), TGFBR1(6), TGFBR2(6), LOX(5), SRFBP1(1)
0.176 0.500 1.25e-19 2.34e-18 ✓ sig. —
Craniofacial abnormalities Growth disorder
14 genes
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10 of 14 corroborated by 2+ sources
RAI1(2), FGD1(2), LTBP3(2), ATRX(2), CNTN4(1), IDH2(2), SH3PXD2B(1), TBX15(2), AHR(2), DNMT3A(2), ERCC6(2), LPAR1(2) +2 more
0.079 0.400 1.28e-19 2.39e-18 ✓ sig. —
Febrile convulsion Seizures
12 genes
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11 of 12 corroborated by 2+ sources
NF1(1), ANO3(2), CPA6(5), HCN1(2), SCN8A(5), CHAT(2), GABRG2(5), SCN1A(2), SCN1B(2), SCN2A(5), IMPA2(2), STX1B(2)
0.079 0.545 1.29e-19 2.41e-18 ✓ sig. —
Urinary bladder neoplasms Uterine neoplasms
14 genes
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FGFR3(1), TERT(1), EGFR(1), MTHFR(1), STAT3(1), CSF3(1), JAK2(1), KRAS(1), MYC(1), CLPTM1L(1), CCND1(1), BAP1(1) +2 more
0.084 0.368 1.34e-19 2.50e-18 ✓ sig. —
Central vertigo Peripheral vertigo
5 genes
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OTOGL(1), ZNF91(1), LYAR(1), QRSL1(1), TMEM128(1)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. —
Polymorphous corneal dystrophy Posterior polymorphous corneal dystrophy
5 genes
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5 of 5 corroborated by 2+ sources
COL8A2(4), OVOL2(4), VSX1(4), GRHL2(3), ZEB1(4)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 75 →
Congenital or early infantile cach syndrome Cree leukoencephalopathy
5 genes
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5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(2), EIF2B2(2), EIF2B4(2), EIF2B5(2)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 170 →
Congenital or early infantile cach syndrome Vanishing white matter disease
5 genes
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5 of 5 corroborated by 2+ sources
EIF2B3(3), EIF2B1(4), EIF2B2(4), EIF2B4(4), EIF2B5(4)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 170 →
Cree leukoencephalopathy Vanishing white matter disease
5 genes
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5 of 5 corroborated by 2+ sources
EIF2B3(2), EIF2B1(3), EIF2B2(3), EIF2B4(3), EIF2B5(3)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 170 →
Bronchus cancer Respiratory system cancer
5 genes
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TERT(1), CHRNA4(1), CHRNA5(1), BRCA2(1), CYP2A6(1)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 294 →
Hereditary hyperekplexia Hyperekplexia
5 genes
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5 of 5 corroborated by 2+ sources
GPHN(5), SLC6A5(7), GLRA1(5), ATAD1(6), GLRB(5)
0.833 1.000 1.39e-19 2.57e-18 ✓ sig. Cluster 379 →
Male infertility Spermatogenic failure
18 genes
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18 of 18 corroborated by 2+ sources
NR5A1(4), DMRT1(3), CATSPER1(5), TDRD9(4), DNAH10(5), SEPTIN4(2), MOV10L1(3), SYCP3(5), STX2(3), PNLDC1(4), SHOC1(4), M1AP(4) +6 more
0.087 0.162 1.50e-19 2.78e-18 ✓ sig. Cluster 31 →
Disseminated intravascular coagulation Venous thrombosis
7 genes
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7 of 7 corroborated by 2+ sources
F13A1(2), F2(2), SERPINC1(2), PROC(2), TFPI(2), F3(2), F7(2)
0.280 0.778 1.51e-19 2.79e-18 ✓ sig. Cluster 55 →
Congenital hypothyroidism Congenital thyroid atrophy
6 genes
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4 of 6 corroborated by 2+ sources
TSHR(3), NKX2-5(2), THRA(1), PAX8(2), TSHB(1), IGSF1(2)
0.400 1.000 1.62e-19 3.00e-18 ✓ sig. Cluster 88 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.