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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Platelet-type bleeding disorder Thrombocytopenia
13 genes
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12 of 13 corroborated by 2+ sources
ITGB3(6), MED12L(1), ITGA2(2), ITGA2B(6), TPM4(4), P2RY12(6), GNE(4), FLI1(5), ACTN1(6), GFI1B(5), SLFN14(6), RASGRP2(7) +1 more
0.088 0.650 1.09e-22 2.33e-21 ✓ sig. Cluster 33 →
Cataract-microcornea syndrome Congenital cataract
9 genes
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9 of 9 corroborated by 2+ sources
CRYBB2(3), MAF(4), CRYAA(4), CRYBA4(3), NHS(2), GJA8(4), CRYGC(4), CRYBB1(4), CRYGD(3)
0.148 1.000 1.11e-22 2.35e-21 ✓ sig. Cluster 43 →
Cerebrovascular disorder Vascular disease
15 genes
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10 of 15 corroborated by 2+ sources
AGT(2), HDAC9(2), MTHFR(2), TNF(2), ATXN2(1), TWIST1(1), ABO(2), CELSR2(1), LPA(1), PSRC1(1), F5(2), IL1RN(2) +3 more
0.123 0.288 1.15e-22 2.45e-21 ✓ sig. Cluster 307 →
Idiopathic pulmonary fibrosis Pulmonary fibrosis
18 genes
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12 of 18 corroborated by 2+ sources
KANSL1(1), RTEL1(4), TERT(4), PARN(3), PLAU(2), STAT3(2), TNF(2), DSP(4), PTGS2(1), MUC5B(4), MUC5AC(1), SFTPC(3) +6 more
0.105 0.220 1.30e-22 2.77e-21 ✓ sig. —
Deafness Usher syndrome
17 genes
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15 of 17 corroborated by 2+ sources
PAX3(2), PCDH15(7), USH2A(7), ADGRV1(7), PSAP(1), CDH23(8), MYO7A(7), COCH(3), CIB2(6), ESPN(6), OTOA(3), SERPINB6(3) +5 more
0.085 0.386 1.55e-22 3.29e-21 ✓ sig. Cluster 26 →
Congenital muscular dystrophy due to dystroglycanopathy Muscle eye brain disease
7 genes
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6 of 7 corroborated by 2+ sources
GMPPB(3), LARGE1(2), CRPPA(2), POMGNT1(3), TSPAN1(1), FKRP(3), B3GALNT2(3)
0.438 1.000 1.58e-22 3.36e-21 ✓ sig. Cluster 14 →
Non-small cell lung carcinoma Seborrheic keratosis
14 genes
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2 of 14 corroborated by 2+ sources
TERT(2), TP63(1), BNC2(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), LPP(1), TYR(1), DEF8(1), CASP8(2), FLACC1(1) +2 more
0.105 0.452 1.77e-22 3.75e-21 ✓ sig. Cluster 29 →
Hemolytic uremic syndrome Mesangiocapillary glomerulonephritis
8 genes
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8 of 8 corroborated by 2+ sources
CFHR1(4), CFI(6), C3(6), CD46(6), CFB(6), CFH(6), CFHR5(2), DGKE(6)
0.235 1.000 1.77e-22 3.76e-21 ✓ sig. Cluster 359 →
Head and neck neoplasms Upper aerodigestive tract neoplasm
17 genes
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LAMC3(1), RERGL(1), IL1A(1), IL1B(1), CCDC192(1), HLA-DQB1(1), TBC1D1(1), CTLA4(1), MACO1(1), STK31(1), CBLB(1), ADH1C(1) +5 more
0.089 0.362 1.88e-22 3.98e-21 ✓ sig. —
Thrombophilia Venous thrombosis
10 genes
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10 of 10 corroborated by 2+ sources
F13A1(3), F2(6), MTHFR(3), PLAT(4), F5(6), PLG(2), F8(4), PROC(5), TFPI(2), SERPINA10(2)
0.222 0.455 1.99e-22 4.21e-21 ✓ sig. Cluster 55 →
Aplasia of the vermis Orofaciodigital syndrome
12 genes
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10 of 12 corroborated by 2+ sources
KIF7(3), WDPCP(1), CPLANE1(6), TMEM216(3), TMEM231(3), KIAA0753(6), OFD1(6), TMEM17(1), TCTN3(6), FAM149B1(2), C2CD3(6), PDE6D(2)
0.160 0.375 1.99e-22 4.21e-21 ✓ sig. Cluster 8 →
Colonic neoplasms Lung neoplasms
32 genes
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1 of 32 corroborated by 2+ sources
WT1(1), HNF1B(1), DPYD(1), TP53(1), EGFR(1), PRKN(1), A2M(1), IL1B(1), MTHFR(1), STAT3(1), TNF(1), CTNNB1(1) +20 more
0.075 0.158 2.14e-22 4.52e-21 ✓ sig. Cluster 5 →
Colorectal neoplasms Stomach neoplasms
40 genes
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DPYD(1), BMP2(1), CHEK2(1), TP53(1), ARID1A(1), EGFR(1), ERCC2(1), FADS1(1), IGFBP3(1), MTHFR(1), PPARG(1), SOD2(1) +28 more
0.072 0.137 2.23e-22 4.69e-21 ✓ sig. Cluster 5 →
Sjogren syndrome Systemic sclerosis
18 genes
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10 of 18 corroborated by 2+ sources
DGKQ(3), HLA-DQA1(2), HLA-DRA(1), HLA-DRB1(2), TNIP1(3), HLA-DQB1(2), ATG5(1), MMP9(2), HLA-DPB1(1), IRF5(2), PTPN22(2), TNFAIP3(3) +6 more
0.099 0.254 2.24e-22 4.72e-21 ✓ sig. Cluster 25 →
Hypothyroidism Sarcoidosis
34 genes
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9 of 34 corroborated by 2+ sources
SH2B3(1), BTNL2(5), HLA-C(1), HLA-DQA1(1), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(5), HLA-DRB5(1), TNXB(1), C2(1), PPARG(1), TAP2(1) +22 more
0.067 0.209 2.30e-22 4.84e-21 ✓ sig. Cluster 28 →
Seborrheic keratosis Skin cancer
13 genes
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TERT(1), BNC2(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), PTPN22(1), LPP(1), TYR(1), CASP8(1), CPVL(1), FLACC1(1) +1 more
0.127 0.419 2.31e-22 4.86e-21 ✓ sig. Cluster 29 →
Distal spinal muscular atrophy Spinal muscular atrophy
11 genes
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6 of 11 corroborated by 2+ sources
TRPV4(2), VRK1(1), SIGMAR1(4), DYNC1H1(4), HSPB1(1), PLEKHG5(2), GARS1(4), HSPB8(1), IGHMBP2(5), FBXO38(1), HSPB3(1)
0.190 0.355 2.44e-22 5.11e-21 ✓ sig. Cluster 15 →
Ciliary dyskinesia Ciliary dyskinesia, with or without situs inversus
10 genes
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10 of 10 corroborated by 2+ sources
DNAH5(7), CCDC40(6), DNAH11(7), DNAI1(5), RSPH4A(7), DNAAF3(6), DNAAF19(7), DNAAF4(7), DRC1(6), ODAD3(7)
0.109 0.909 3.04e-22 6.38e-21 ✓ sig. Cluster 9 →
Tetralogy of fallot Ventricular septal defect
15 genes
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15 of 15 corroborated by 2+ sources
TBX1(5), GATA4(6), BRAF(2), FBN2(2), NKX2-6(3), SMARCA4(2), TBX5(2), FLNA(2), GATA5(4), TBX20(2), NKX2-5(6), CITED2(6) +3 more
0.106 0.357 3.55e-22 7.42e-21 ✓ sig. —
Colonic neoplasms Pancreatic neoplasms
24 genes
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3 of 24 corroborated by 2+ sources
WT1(1), HNF1B(1), DPYD(1), TP53(1), EGFR(1), MECOM(2), PPARG(1), SOD2(1), STAT3(1), TNF(1), PTGS2(1), CTNNB1(1) +12 more
0.081 0.205 3.65e-22 7.63e-21 ✓ sig. Cluster 5 →
Myocardial ischemia Nonalcoholic fatty liver disease
46 genes
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40 of 46 corroborated by 2+ sources
CDH2(3), SERPINA1(3), ACE(2), APOC1(1), APOE(2), BTNL2(2), JCAD(2), LDLR(3), MLXIPL(2), NYAP2(1), PTPRD(2), SCARB1(3) +34 more
0.069 0.146 3.73e-22 7.79e-21 ✓ sig. —
Congenital glaucoma Hydrophthalmos
6 genes
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6 of 6 corroborated by 2+ sources
TCF7L2(2), CYP1B1(2), TEK(3), MYOC(3), GPATCH3(2), LTBP2(3)
0.750 1.000 3.79e-22 7.87e-21 ✓ sig. —
Congenital hypothyroidism without goiter Thyroid agenesis
6 genes
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TSHR(1), NKX2-5(1), THRA(1), PAX8(1), TSHB(1), IGSF1(1)
0.750 1.000 3.79e-22 7.87e-21 ✓ sig. Cluster 88 →
Congenital thyroid atrophy Thyroid agenesis
6 genes
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TSHR(1), NKX2-5(1), THRA(1), PAX8(1), TSHB(1), IGSF1(1)
0.750 1.000 3.79e-22 7.87e-21 ✓ sig. Cluster 88 →
Berardinelli-seip congenital lipodystrophy Generalized lipodystrophy
6 genes
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5 of 6 corroborated by 2+ sources
PPARG(1), FOS(2), CAV1(2), BSCL2(2), CAVIN1(2), AGPAT2(2)
0.750 1.000 3.79e-22 7.87e-21 ✓ sig. Cluster 71 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.