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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
B-cell acute lymphoblastic leukemia B-lymphoblastic leukemia/lymphoma
5 genes
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5 of 5 corroborated by 2+ sources
IKZF1(2), PIP4K2A(2), GATA3(2), CDKN2A(2), FLT3(2)
0.067 0.263 8.45e-9 6.83e-8 ✓ sig. Cluster 3 →
Papilloma Transitional cell carcinoma
4 genes
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PTGS2(1), CDKN1A(1), HRAS(1), CCND1(1)
0.095 0.333 8.55e-9 6.90e-8 ✓ sig. —
Hyperlipoproteinemia Hypertriglyceridemia
5 genes
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5 of 5 corroborated by 2+ sources
APOB(2), LPL(5), PPARA(2), CETP(2), APOA5(6)
0.078 0.179 8.59e-9 6.93e-8 ✓ sig. —
Blindness Stargardt disease
4 genes
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3 of 4 corroborated by 2+ sources
ABCA4(4), LCA5(2), RPE65(2), RHO(1)
0.103 0.286 8.64e-9 6.98e-8 ✓ sig. —
Epidermolysis bullosa Weber-cockayne syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KRT5(7), ITGB4(5), KRT14(7)
0.130 0.750 8.74e-9 7.04e-8 ✓ sig. —
Beta thalassemia Digenic hemochromatosis
3 genes
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3 of 3 corroborated by 2+ sources
TFR2(3), HFE(2), HAMP(3)
0.130 0.750 8.74e-9 7.04e-8 ✓ sig. Cluster 135 →
Anti-glomerular basement membrane disease Graft-versus-host disease
3 genes
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1 of 3 corroborated by 2+ sources
HLA-DPB1(1), CTLA4(2), FCGR3A(1)
0.130 0.750 8.74e-9 7.04e-8 ✓ sig. —
Cancer Ovarian epithelial cancer
14 genes
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HNF1B(1), TERT(1), BNC2(1), HLA-DRB5(1), JAZF1(1), MECOM(1), NSF(1), TTC28(1), ZFHX3(1), MLLT10(1), NEK10(1), CCDC170(1) +2 more
0.039 0.122 8.84e-9 7.12e-8 ✓ sig. Cluster 20 →
Atypical hemolytic uremic syndrome Hemolytic uremic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CFI(6), CD46(6), CFH(6)
0.088 1.000 8.97e-9 7.22e-8 ✓ sig. —
Sarcoma Synovial sarcoma
3 genes
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3 of 3 corroborated by 2+ sources
SS18(2), SSX1(2), SSX2(3)
0.088 1.000 8.97e-9 7.22e-8 ✓ sig. Cluster 11 →
Chloracne Hemoglobin m disease
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(4), HBA2(3), HBB(5)
0.088 1.000 8.97e-9 7.22e-8 ✓ sig. Cluster 72 →
Chloracne Unstable hemoglobin disease
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(3), HBA2(3), HBB(5)
0.088 1.000 8.97e-9 7.22e-8 ✓ sig. Cluster 72 →
Exanthema Stevens-johnson syndrome
4 genes
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4 of 4 corroborated by 2+ sources
HLA-B(3), VWF(2), C1QA(2), LBP(2)
0.049 0.667 9.07e-9 7.29e-8 ✓ sig. —
Collagen vi-related myopathy Steroid-resistant nephrotic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(2), COL4A3(2), COL4A4(2)
0.176 0.500 9.39e-9 7.55e-8 ✓ sig. Cluster 49 →
Anhydramnios autosomal dominant polycystic kidney disease
3 genes
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3 of 3 corroborated by 2+ sources
DNAJB11(2), PKD1(2), PKD2(2)
0.188 0.429 9.48e-9 7.62e-8 ✓ sig. —
Sepsis Trigeminal neuralgia
4 genes
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4 of 4 corroborated by 2+ sources
IL1B(2), TNF(2), MAPK1(2), MAPK3(2)
0.093 0.333 9.68e-9 7.78e-8 ✓ sig. —
Beta thalassemia Polycythemia
4 genes
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4 of 4 corroborated by 2+ sources
HFE(2), EPO(3), GH1(2), HBB(8)
0.108 0.211 9.78e-9 7.85e-8 ✓ sig. —
Craniosynostosis Tooth agenesis
6 genes
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5 of 6 corroborated by 2+ sources
BMP2(2), GLI3(1), MSX2(8), MSX1(5), FGFR1(3), AXIN2(2)
0.063 0.146 9.88e-9 7.93e-8 ✓ sig. Cluster 63 →
Cerebral hemorrhage Coronary restenosis
4 genes
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4 of 4 corroborated by 2+ sources
ACE(2), MMP3(2), SPP1(2), HMOX1(2)
0.100 0.286 1.00e-8 8.04e-8 ✓ sig. —
Gastric ulcer Gastritis
5 genes
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1 of 5 corroborated by 2+ sources
KCNF1(1), ZNF385B(1), IL1B(2), SORCS2(1), CDH18(1)
0.070 0.227 1.00e-8 8.04e-8 ✓ sig. —
Nasopharyngeal carcinoma Penile neoplasms
3 genes
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1 of 3 corroborated by 2+ sources
TP53(3), KRAS(1), PIK3CA(1)
0.125 0.750 1.01e-8 8.11e-8 ✓ sig. —
Atrial septal defect Congenital heart defects
6 genes
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4 of 6 corroborated by 2+ sources
GATA4(6), FOXP1(1), TGFB2(2), MYH6(6), ISL1(1), GATA6(6)
0.060 0.171 1.04e-8 8.32e-8 ✓ sig. —
Myelodysplastic syndrome Myeloproliferative disorder
6 genes
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6 of 6 corroborated by 2+ sources
RUNX1(2), TERT(2), TP53(2), JAK2(2), DNMT3A(2), DLK1(2)
0.064 0.130 1.05e-8 8.39e-8 ✓ sig. Cluster 53 →
X-linked complex neurodevelopmental disorder X-linked syndromic complex neurodevelopmental disorder
3 genes
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3 of 3 corroborated by 2+ sources
AP1S2(2), TFE3(2), ZFX(2)
0.083 1.000 1.08e-8 8.62e-8 ✓ sig. Cluster 115 →
Aplastic anemia Essential thrombocythemia
4 genes
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4 of 4 corroborated by 2+ sources
MPL(2), THPO(3), TGFB1(2), JAK2(4)
0.095 0.308 1.08e-8 8.68e-8 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.