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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cowden disease Paraganglioma
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(5), SDHD(4), SDHC(5)
0.200 0.375 7.72e-9 6.39e-8 ✓ sig. Cluster 81 →
Cowden disease Pheochromocytoma/paraganglioma syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(6), SDHD(5), SDHC(5)
0.200 0.375 7.72e-9 6.39e-8 ✓ sig. Cluster 81 →
Antiphospholipid syndrome Autoimmune polyendocrine syndrome
3 genes
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0.136 0.750 7.49e-9 6.21e-8 ✓ sig. Cluster 1 →
Antiphospholipid syndrome Oropharyngeal neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
0.136 0.750 7.49e-9 6.21e-8 ✓ sig. Cluster 1 →
46,xx sex reversal 46,xy gonadal dysgenesis
3 genes
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3 of 3 corroborated by 2+ sources
NR5A1(2), SOX9(2), SRY(2)
0.167 0.600 7.47e-9 6.20e-8 ✓ sig. Cluster 38 →
Cerebral saccular aneurysm Intracranial aneurysm
3 genes
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3 of 3 corroborated by 2+ sources
THSD1(2), ENG(2), ANGPTL6(3)
0.167 0.600 7.47e-9 6.20e-8 ✓ sig. Cluster 334 →
Disruptive impulse-control and conduct disorder Dyskinesia, drug-induced
3 genes
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3 of 3 corroborated by 2+ sources
DRD2(2), DRD3(2), FOSB(2)
0.167 0.600 7.47e-9 6.20e-8 ✓ sig. —
Carotid artery disease Hyperinsulinism
6 genes
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5 of 6 corroborated by 2+ sources
AGT(2), HMOX1(2), CCL2(2), LTA(1), UCP2(2), CD163(2)
0.065 0.143 7.45e-9 6.19e-8 ✓ sig. Cluster 36 →
Diabetic cardiomyopathy Hypoglycemia
4 genes
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3 of 4 corroborated by 2+ sources
INS(2), TNF(2), INS-IGF2(1), AGTR2(2)
0.105 0.286 7.41e-9 6.16e-8 ✓ sig. —
Selective iga deficiency disease Selective immunoglobulin a deficiency
3 genes
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3 of 3 corroborated by 2+ sources
IFIH1(2), CLEC16A(2), AHI1(2)
0.094 1.000 7.39e-9 6.14e-8 ✓ sig. Cluster 360 →
Congenital cystic eyeball Nanophthalmos
3 genes
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3 of 3 corroborated by 2+ sources
PRSS56(2), RAX(2), ALDH1A3(2)
0.188 0.500 7.22e-9 6.01e-8 ✓ sig. Cluster 56 →
Cardiofaciocutaneous syndrome Congenital malformation syndromes associated with short stature
3 genes
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2 of 3 corroborated by 2+ sources
BRAF(7), PTPN11(3), RIT1(1)
0.188 0.500 7.22e-9 6.01e-8 ✓ sig. Cluster 42 →
Hypotrichosis simplex Woolly hair
3 genes
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3 of 3 corroborated by 2+ sources
KRT74(6), LIPH(3), LPAR6(4)
0.188 0.500 7.22e-9 6.01e-8 ✓ sig. —
Intestinal obstruction Visceral neuropathy
3 genes
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3 of 3 corroborated by 2+ sources
ERBB3(4), ACTG2(2), TYMP(2)
0.188 0.500 7.22e-9 6.01e-8 ✓ sig. —
Diabetic nephropathy type 1 Latent autoimmune diabetes in adults
3 genes
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HLA-DQA1(1), HLA-DQB1(1), PTPN22(1)
0.188 0.500 7.22e-9 6.01e-8 ✓ sig. Cluster 1 →
Oropharyngeal cancer Pemphigus vulgaris
4 genes
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1 of 4 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), HLA-DQB1(2), THSD7B(1)
0.063 0.571 7.23e-9 6.01e-8 ✓ sig. —
Graves disease Kawasaki disease
8 genes
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3 of 8 corroborated by 2+ sources
BTNL2(1), VEGFA(1), TNF(1), CD40LG(1), HLA-DQB1(2), CD40(3), LTA(2), TSBP1(1)
0.051 0.125 7.21e-9 6.01e-8 ✓ sig. —
Status epilepticus Temporal lobe epilepsy
6 genes
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6 of 6 corroborated by 2+ sources
VEGFA(2), CNR1(2), GRM1(2), GRM5(2), SLC12A5(2), AQP4(2)
0.061 0.182 7.13e-9 5.95e-8 ✓ sig. —
Absence epilepsy Childhood absence epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
CACNA1H(5), GABRB3(5), JRK(2)
0.200 0.429 6.89e-9 5.75e-8 ✓ sig. Cluster 47 →
Bone resorption Osteolysis
3 genes
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PTHLH(1), TNFRSF11B(1), TNFSF11(1)
0.200 0.429 6.89e-9 5.75e-8 ✓ sig. Cluster 262 →
Developmental delay Leber hereditary optic neuropathy
5 genes
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5 of 5 corroborated by 2+ sources
ND2(2), COX3(2), ND5(2), ND4(2), CYTB(2)
0.081 0.179 6.57e-9 5.48e-8 ✓ sig. Cluster 32 →
B-lymphoblastic leukemia/lymphoma Lymphoblastic leukemia
5 genes
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5 of 5 corroborated by 2+ sources
IKZF1(2), PIP4K2A(2), PAX5(4), FLT3(2), BCR(2)
0.069 0.263 6.49e-9 5.42e-8 ✓ sig. Cluster 3 →
Intellectual disability West syndrome
6 genes
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GRIN2B(1), SCN8A(1), ST3GAL3(1), SCN1A(1), STXBP1(1), TSC2(1)
0.059 0.200 6.39e-9 5.34e-8 ✓ sig. —
Hyperparathyroidism Parathyroid disease
3 genes
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TMEM14B(1), C1orf185(1), MAFB(1)
0.143 0.750 6.37e-9 5.32e-8 ✓ sig. —
Nephrosclerosis Urethral obstruction
4 genes
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4 of 4 corroborated by 2+ sources
TGFB1(2), ACTA2(2), COL3A1(2), HIPK2(2)
0.108 0.286 6.32e-9 5.28e-8 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.