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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hemoglobin m disease methemoglobinemia, alpha type
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(4), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
Hyperkalemic periodic paralysis Paramyotonia congenita
2 genes
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1 of 2 corroborated by 2+ sources
SCN4A(5), RANBP2(1)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 163 →
erythrocytosis, familial, 7 Hemoglobin barts fetalis syndrome
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
erythrocytosis, familial, 7 Hemoglobin h disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(6), HBA2(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
erythrocytosis, familial, 7 Hemoglobin m disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(4), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
Gm2 gangliosidosis Tay-sachs disease
2 genes
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2 of 2 corroborated by 2+ sources
HEXA(7), GM2A(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. —
Gastrointestinal stromal tumor Holoprosencephaly
5 genes
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5 of 5 corroborated by 2+ sources
CDON(6), GLI2(6), PTCH1(7), BOC(2), DISP1(5)
0.069 0.172 2.39e-8 1.86e-7 ✓ sig. Cluster 96 →
Hemolytic uremic syndrome Mitochondrial myopathy
4 genes
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4 of 4 corroborated by 2+ sources
IL1A(2), IL1B(2), TNF(2), IL6(2)
0.089 0.267 2.35e-8 1.82e-7 ✓ sig. —
Atrioventricular septal defect Ventricular septal defect
4 genes
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3 of 4 corroborated by 2+ sources
GATA4(5), TBX5(1), GATA6(6), CRELD1(6)
0.078 0.333 2.33e-8 1.81e-7 ✓ sig. —
Differentiated thyroid carcinoma Neuroblastoma
8 genes
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6 of 8 corroborated by 2+ sources
TERT(3), NTRK1(2), KRAS(2), NRAS(2), ALK(2), SLK(1), STN1(1), HRAS(2)
0.041 0.163 2.28e-8 1.77e-7 ✓ sig. —
Cardiac conduction disease Short qt syndrome
3 genes
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CACNB2(1), TRPM4(1), SCN5A(1)
0.167 0.333 2.27e-8 1.77e-7 ✓ sig. —
Hyperinsulinemic hypoglycemia Transient neonatal diabetes mellitus
3 genes
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3 of 3 corroborated by 2+ sources
ABCC8(6), KCNJ11(6), GCK(4)
0.167 0.333 2.27e-8 1.77e-7 ✓ sig. Cluster 36 →
Allergic contact dermatitis Autoimmune hepatitis
6 genes
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6 of 6 corroborated by 2+ sources
IL10(2), IL2(2), IL4(2), IFNG(2), IL18(2), IL5(2)
0.057 0.158 2.25e-8 1.75e-7 ✓ sig. Cluster 16 →
Astigmatism Hyperopia
4 genes
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1 of 4 corroborated by 2+ sources
ANKRD11(2), SLC9A6(1), MCM7(1), SCLT1(1)
0.048 0.571 2.22e-8 1.73e-7 ✓ sig. —
Developmental delay Neuropathy, ataxia, and retinitis pigmentosa
4 genes
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ND2(1), COX3(1), ND5(1), ND4(1)
0.083 0.308 2.22e-8 1.73e-7 ✓ sig. Cluster 32 →
Cholangiocarcinoma Giant cell glioblastoma
4 genes
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3 of 4 corroborated by 2+ sources
TP53(2), EGFR(2), IDH1(2), ROS1(1)
0.083 0.308 2.22e-8 1.73e-7 ✓ sig. —
Partington syndrome X-linked complex neurodevelopmental disorder
4 genes
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4 of 4 corroborated by 2+ sources
ARX(8), AP1S2(3), KDM5C(2), PAK3(2)
0.087 0.286 2.20e-8 1.72e-7 ✓ sig. —
Beta thalassemia Hemoglobin e disease
3 genes
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3 of 3 corroborated by 2+ sources
BCL11A(2), HBS1L(2), HBB(8)
0.125 0.600 2.18e-8 1.70e-7 ✓ sig. —
Dystonia Early-onset generalized limb-onset dystonia
3 genes
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3 of 3 corroborated by 2+ sources
EIF2AK2(6), TOR1A(6), SHQ1(4)
0.067 1.000 2.18e-8 1.70e-7 ✓ sig. Cluster 167 →
Eosinophilia Rhinitis
8 genes
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3 of 8 corroborated by 2+ sources
CCL26(1), EMSY(1), HLA-DQA1(2), TLR4(2), SMAD3(1), CLEC16A(1), TLR2(2), WDR36(1)
0.047 0.123 2.18e-8 1.70e-7 ✓ sig. Cluster 16 →
Cardioembolic stroke Long qt syndrome
9 genes
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8 of 9 corroborated by 2+ sources
RBM20(2), TBX5(3), KCNJ5(8), KLF12(1), SYNE2(2), NKX2-5(2), KCNH2(8), TTN(2), HCN4(2)
0.046 0.089 2.16e-8 1.69e-7 ✓ sig. —
Idiopathic steroid-resistant nephrotic syndrome Nephrotic syndrome, idiopathic, steroid-resistant
3 genes
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2 of 3 corroborated by 2+ sources
NPHS2(2), NUP93(1), NUP205(2)
0.100 0.750 2.15e-8 1.68e-7 ✓ sig. —
Angina pectoris Arteriosclerosis
4 genes
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2 of 4 corroborated by 2+ sources
TLR4(2), MMP1(1), MMP9(2), ITGA2(1)
0.080 0.333 2.11e-8 1.65e-7 ✓ sig. —
Central nervous system non-hodgkin lymphoma Rosacea
3 genes
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HLA-DQA1(1), HLA-DRB1(1), IRF4(1)
0.158 0.429 2.09e-8 1.63e-7 ✓ sig. Cluster 1 →
Iron overload Neurodegeneration with brain iron accumulation
3 genes
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2 of 3 corroborated by 2+ sources
CP(3), BEST1(1), FTH1(6)
0.158 0.429 2.09e-8 1.63e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.