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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Embryonal carcinoma Graft-versus-host disease
2 genes
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2 of 2 corroborated by 2+ sources
TNFRSF8(2), TNFSF8(2)
0.091 1.000 1.77e-6 9.96e-6 ✓ sig. —
Cushing syndrome Sick sinus syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CACNA1D(2), POMC(2), KCNJ5(2)
0.081 0.167 1.76e-6 9.94e-6 ✓ sig. —
Diffuse large b-cell lymphoma Necrosis
5 genes
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CAT(1), BCL2(1), FAS(1), SOD2(1), SOD3(1)
0.046 0.091 1.76e-6 9.91e-6 ✓ sig. —
Hemochromatosis Hepatolenticular degeneration
3 genes
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3 of 3 corroborated by 2+ sources
CP(2), TNF(2), HAMP(6)
0.077 0.214 1.73e-6 9.76e-6 ✓ sig. —
inherited retinal dystrophy Night blindness, congenital stationary
3 genes
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3 of 3 corroborated by 2+ sources
PDE6B(4), GNAT1(4), SLC24A1(4)
0.079 0.200 1.70e-6 9.59e-6 ✓ sig. Cluster 151 →
Imerslund-grasbeck syndrome Vitamin b deficiency
2 genes
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2 of 2 corroborated by 2+ sources
CUBN(6), AMN(5)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 106 →
Desmoid tumor Intestinal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
CTNNB1(3), APC(6)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. —
Bouillaud’s disease Latent autoimmune diabetes in adults
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 1 →
Congenital respiratory system anomaly familial thoracic aortic aneurysm and aortic dissection
2 genes
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2 of 2 corroborated by 2+ sources
TGFB2(2), TGFB3(2)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. —
Bile acid malabsorption Diabetes complications
2 genes
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2 of 2 corroborated by 2+ sources
SLC10A2(5), SLC51B(4)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 351 →
Bietti crystalline corneoretinal dystrophy Hereditary corneal dystrophy
2 genes
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1 of 2 corroborated by 2+ sources
CYP4V2(6), KLKB1(1)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. —
Hyperoxaluria Pfaundler-hurler syndrome
2 genes
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1 of 2 corroborated by 2+ sources
IDUA(1), SLC26A1(2)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 296 →
Lipoma Venous hypertension
2 genes
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SLC19A2(1), F5(1)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 37 →
Autoimmune musculoskeletal system disorder Bouillaud’s disease
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 1 →
Autoimmune musculoskeletal system disorder Skeletal system disease
2 genes
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0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 1 →
Autoimmune musculoskeletal system disorder Wheat allergic reaction
2 genes
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0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 1 →
Hyperkinesia Lewy body disease
5 genes
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5 of 5 corroborated by 2+ sources
NTRK2(2), NGF(2), NTS(3), TH(2), SNCG(2)
0.040 0.152 1.66e-6 9.43e-6 ✓ sig. —
Brain neoplasms Tongue neoplasms
3 genes
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TERT(1), SOD2(1), HRAS(1)
0.065 0.300 1.64e-6 9.32e-6 ✓ sig. —
Dermatologic disorder Juvenile arthritis
7 genes
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7 of 7 corroborated by 2+ sources
IL1RN(2), ALOX12(2), CD83(2), NR4A2(2), TNFAIP6(2), TNIK(2), UBE2E1(2)
0.036 0.103 1.64e-6 9.32e-6 ✓ sig. —
Juvenile arthritis Lung neoplasms
12 genes
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STAT3(1), FOS(1), NRG1(1), EGR1(1), MAPK1(1), KRAS(1), DAPK1(1), FOSL2(1), FOSB(1), JUN(1), KCNJ15(1), STIM1(1)
0.032 0.092 1.61e-6 9.15e-6 ✓ sig. —
Congenital impairment of spermatozoa motility Male infertility spermatogenesis disorder
3 genes
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ARMC2(1), TTC29(1), DNAH17(1)
0.081 0.188 1.61e-6 9.13e-6 ✓ sig. Cluster 31 →
Latent autoimmune diabetes in adults Selective iga deficiency disease
3 genes
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HLA-DQA1(1), RBM17(1), PFKFB3(1)
0.073 0.250 1.61e-6 9.11e-6 ✓ sig. —
Hyperplasia Papilloma
3 genes
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PTGS2(1), TGFB1(1), CCND1(1)
0.073 0.250 1.61e-6 9.11e-6 ✓ sig. —
Neuronal ceroid lipofuscinosis Trigeminal neuralgia
3 genes
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3 of 3 corroborated by 2+ sources
GFAP(2), MAPK1(2), MAPK3(2)
0.073 0.250 1.61e-6 9.11e-6 ✓ sig. —
congenital heart disease with heterotaxy syndrome Situs inversus
2 genes
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2 of 2 corroborated by 2+ sources
ZIC3(2), NODAL(3)
0.095 1.000 1.60e-6 9.10e-6 ✓ sig. Cluster 46 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.