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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Aplasia of the vermis Polydactyly
6 genes
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1 of 6 corroborated by 2+ sources
KIF7(1), CPLANE1(1), CC2D2A(1), KIAA0586(2), MKS1(1), OFD1(1)
0.068 0.154 4.17e-9 3.54e-8 ✓ sig. Cluster 8 →
Mitochondrial myopathy Polymyositis
4 genes
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4 of 4 corroborated by 2+ sources
IL1A(2), IL1B(2), TNF(2), IL6(2)
0.118 0.267 4.22e-9 3.58e-8 ✓ sig. —
Congenital communicating hydrocephalus Hydrocephalus
3 genes
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3 of 3 corroborated by 2+ sources
MPDZ(2), WDR81(2), TRIM71(2)
0.111 1.000 4.27e-9 3.63e-8 ✓ sig. Cluster 293 →
Central nervous system non-hodgkin lymphoma Lymphoma
4 genes
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HLA-DQA1(1), HLA-DRB1(1), EXOC2(1), IRF4(1)
0.070 0.571 4.34e-9 3.68e-8 ✓ sig. Cluster 1 →
Lymphoma Uveomeningoencephalitic syndrome
4 genes
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3 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-DQB1(2), IFNA2(1)
0.070 0.571 4.34e-9 3.68e-8 ✓ sig. Cluster 1 →
Brain ischemia Non-neoplastic peripheral nervous system disease
7 genes
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5 of 7 corroborated by 2+ sources
ICAM1(2), IGF1(1), SOD2(2), IL6(2), CSF3(1), JUN(2), CASP9(2)
0.059 0.130 4.41e-9 3.74e-8 ✓ sig. —
Cortical dysplasia with other brain malformations Tubulinopathy
3 genes
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3 of 3 corroborated by 2+ sources
TUBB2A(5), TUBB3(4), TUBB2B(5)
0.158 0.750 4.47e-9 3.78e-8 ✓ sig. Cluster 176 →
Bronchiectasis Liddle syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SCNN1A(6), SCNN1B(6), SCNN1G(8)
0.158 0.750 4.47e-9 3.78e-8 ✓ sig. Cluster 95 →
Autosomal recessive ataxia Zellweger spectrum disorder
3 genes
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3 of 3 corroborated by 2+ sources
PEX10(4), PEX16(3), PEX2(3)
0.188 0.600 4.70e-9 3.97e-8 ✓ sig. —
Basal ganglia disease Disruptive impulse-control and conduct disorder
3 genes
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3 of 3 corroborated by 2+ sources
PRL(2), DRD2(2), DRD3(2)
0.188 0.600 4.70e-9 3.97e-8 ✓ sig. —
Scleroderma Stevens-johnson syndrome
6 genes
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6 of 6 corroborated by 2+ sources
TAP2(2), CAV1(2), HLA-DQB1(2), CSF3(2), PSORS1C1(2), HLA-A(2)
0.059 0.214 4.79e-9 4.05e-8 ✓ sig. —
Mycosis fungoides Sezary syndrome
3 genes
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1 of 3 corroborated by 2+ sources
CD28(1), CTLA4(1), TNFRSF1B(2)
0.107 1.000 4.81e-9 4.06e-8 ✓ sig. —
Cardiac conduction disease Hereditary bundle branch system defect
3 genes
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TRPM4(1), SCN5A(1), SCN1B(1)
0.214 0.429 4.83e-9 4.08e-8 ✓ sig. Cluster 4 →
Cowden disease hereditary pheochromocytoma-paraganglioma
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(3), SDHD(3), SDHC(3)
0.214 0.429 4.83e-9 4.08e-8 ✓ sig. Cluster 81 →
Congenital arteriovenous malformation Epidermal nevus
3 genes
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2 of 3 corroborated by 2+ sources
HRAS(3), PIK3CA(3), LRRC56(1)
0.214 0.429 4.83e-9 4.08e-8 ✓ sig. Cluster 18 →
Congenital myasthenic syndrome Fetal akinesia deformation sequence
4 genes
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4 of 4 corroborated by 2+ sources
RAPSN(6), MUSK(5), SLC18A3(4), DOK7(8)
0.105 0.333 4.97e-9 4.19e-8 ✓ sig. Cluster 34 →
Hyperammonemia Urea cycle disorder
3 genes
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3 of 3 corroborated by 2+ sources
CPS1(3), NAGS(6), OTC(3)
0.214 0.375 5.15e-9 4.34e-8 ✓ sig. —
Dyslipidemias Hepatomegaly
5 genes
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5 of 5 corroborated by 2+ sources
LDLR(2), PPARA(2), NR5A2(2), SLC29A3(4), LEPR(2)
0.069 0.278 5.25e-9 4.42e-8 ✓ sig. —
Connective tissue disease Myopia
11 genes
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3 of 11 corroborated by 2+ sources
COL2A1(2), FBN1(1), COL11A1(1), FBN2(1), FLNA(1), EFEMP1(1), MYH11(1), NDE1(1), ZNF469(1), COL9A1(2), SLC39A13(2)
0.046 0.094 5.24e-9 4.42e-8 ✓ sig. Cluster 12 →
Constitutional mismatch repair deficiency Rhabdomyosarcoma
4 genes
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4 of 4 corroborated by 2+ sources
MSH2(7), MSH6(7), PMS2(7), MLH1(6)
0.108 0.308 5.30e-9 4.47e-8 ✓ sig. Cluster 166 →
Anterior polar cataract Nuclear cataract
3 genes
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3 of 3 corroborated by 2+ sources
CRYAA(2), CRYBB3(2), CRYBA2(2)
0.150 0.750 5.36e-9 4.51e-8 ✓ sig. Cluster 43 →
Hemangiosarcoma Penile neoplasms
3 genes
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TP53(1), KRAS(1), HRAS(1)
0.150 0.750 5.36e-9 4.51e-8 ✓ sig. —
Cecal neoplasms Hemangiosarcoma
3 genes
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CTNNB1(1), KRAS(1), CCND1(1)
0.150 0.750 5.36e-9 4.51e-8 ✓ sig. —
Autoimmune polyendocrine syndrome Henoch schoenlein purpura
3 genes
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3 of 3 corroborated by 2+ sources
0.150 0.750 5.36e-9 4.51e-8 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Chorea
3 genes
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0.150 0.750 5.36e-9 4.51e-8 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.