Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Focal glomerulosclerosis Glomerulonephritis
10 genes
Show details
5 of 10 corroborated by 2+ sources
WT1(2), COL4A4(2), AGT(2), LAMB2(1), SERPINE1(1), APOL1(2), PLCE1(1), INF2(1), MYH9(1), NPHS1(2)
0.069 0.175 2.07e-12 2.39e-11 ✓ sig. —
Hoyeraal hreidarsson syndrome Telomere-related pulmonary fibrosis and/or bone marrow failure
4 genes
Show details
4 of 4 corroborated by 2+ sources
RTEL1(7), TERT(7), PARN(7), POT1(4)
0.308 0.500 2.09e-12 2.42e-11 ✓ sig. Cluster 64 →
Lamellar cataract Sutural cataract
4 genes
Show details
4 of 4 corroborated by 2+ sources
BFSP2(2), CRYGS(2), MIP(2), CRYBA1(2)
0.286 0.667 2.11e-12 2.44e-11 ✓ sig. Cluster 43 →
Dental caries Lung cancer
37 genes
Show details
3 of 37 corroborated by 2+ sources
RTEL1(1), ABT1(1), CPNE4(1), EPHX2(1), FUT2(1), H4C8(1), HLA-DQA1(1), HLA-DRB5(1), HMGN4(1), MOG(1), MSX2(1), MTMR3(1) +25 more
0.044 0.160 2.13e-12 2.46e-11 ✓ sig. Cluster 20 →
Distal myopathy Vitelliform macular dystrophy
4 genes
Show details
4 of 4 corroborated by 2+ sources
BEST1(4), IMPG1(4), IMPG2(4), PRPH2(4)
0.250 0.800 2.14e-12 2.46e-11 ✓ sig. Cluster 303 →
Osteogenesis imperfecta Osteoporosis
10 genes
Show details
8 of 10 corroborated by 2+ sources
SERPINF1(6), COL1A1(7), COL1A2(7), WNT1(7), LRP5(4), IFITM5(6), P4HB(4), PLS3(1), SP7(6), PGGHG(1)
0.057 0.256 2.16e-12 2.49e-11 ✓ sig. Cluster 68 →
Congenital ear anomaly Usher syndrome
7 genes
Show details
6 of 7 corroborated by 2+ sources
PCDH15(7), USH2A(7), ADGRV1(7), CDH23(8), MYO7A(7), C10orf105(1), PDZD7(6)
0.101 0.226 2.36e-12 2.71e-11 ✓ sig. Cluster 26 →
Bone disease Bone fracture
10 genes
Show details
1 of 10 corroborated by 2+ sources
AXIN1(1), FMN2(1), RSPO3(1), SUPT3H(1), CYP19A1(1), ESR1(3), CCDC170(1), SEM1(1), SFRP4(1), STARD3NL(1)
0.071 0.147 2.36e-12 2.72e-11 ✓ sig. Cluster 299 →
Epilepsy of infancy with migrating focal seizures West syndrome
5 genes
Show details
5 of 5 corroborated by 2+ sources
KCNQ2(2), SCN1A(2), SCN2A(2), PLCB1(2), PIGA(2)
0.143 0.556 2.48e-12 2.85e-11 ✓ sig. —
Malignant migrating partial seizures of infancy West syndrome
5 genes
Show details
4 of 5 corroborated by 2+ sources
KCNQ2(2), SCN1A(2), SCN2A(1), PLCB1(2), PIGA(2)
0.143 0.556 2.48e-12 2.85e-11 ✓ sig. —
Immune system disease Thyroid disease
8 genes
Show details
FAM76B(1), HLA-DQA1(1), ATXN2(1), CEP43(1), CTLA4(1), PTPN22(1), STAT4(1), RNF39(1)
0.087 0.174 2.68e-12 3.08e-11 ✓ sig. —
Conduction disorder of the heart Short qt syndrome
5 genes
Show details
3 of 5 corroborated by 2+ sources
TRPM4(1), CACNA1C(3), KCNH2(5), KCNQ1(6), SCN5A(1)
0.161 0.455 2.71e-12 3.11e-11 ✓ sig. —
Hemangiosarcoma Uterine neoplasms
6 genes
Show details
VEGFA(1), CTNNB1(1), CSF3(1), KRAS(1), MYC(1), CCND1(1)
0.118 0.333 2.71e-12 3.11e-11 ✓ sig. Cluster 3 →
Aplasia of the vermis Cystic kidney disease
7 genes
Show details
CC2D2A(1), RPGRIP1L(1), TMEM67(1), CEP290(1), TMEM216(1), MKS1(1), TCTN2(1)
0.095 0.269 2.72e-12 3.12e-11 ✓ sig. Cluster 8 →
Myeloid leukemia Myeloproliferative disorder
11 genes
Show details
9 of 11 corroborated by 2+ sources
CHEK2(2), RUNX1(5), TERT(3), FOXO1(2), MECOM(2), BCL2(2), JAK2(3), DNMT3A(3), BCR(3), GSKIP(1), ATG2B(1)
0.057 0.208 2.78e-12 3.19e-11 ✓ sig. Cluster 53 →
Dermatitis Rhinitis
8 genes
Show details
4 of 8 corroborated by 2+ sources
EMSY(1), HLA-DQA1(3), IL4(2), TNF(1), CAPSL(1), CLEC16A(1), NOD2(2), IL13(2)
0.083 0.211 2.86e-12 3.28e-11 ✓ sig. Cluster 16 →
Apert syndrome Mobius syndrome
4 genes
Show details
RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.235 0.800 2.91e-12 3.34e-11 ✓ sig. Cluster 48 →
Androgenetic alopecia Breast cancer
69 genes
Show details
KANSL1(1), CASZ1(1), RREB1(1), PDE4D(1), ARL17B(1), CCDC91(1), CDKAL1(1), CUX1(1), EBF1(1), ECHDC3(1), FAR2(1), GLI2(1) +57 more
0.049 0.169 2.94e-12 3.37e-11 ✓ sig. Cluster 20 →
Dejerine-sottas disease Spinal muscular atrophy
7 genes
Show details
4 of 7 corroborated by 2+ sources
KIF1B(1), TRPV4(2), DYNC1H1(4), HSPB1(1), PLEKHG5(2), GARS1(4), HSPB8(1)
0.101 0.189 3.03e-12 3.47e-11 ✓ sig. Cluster 15 →
Endometrial cancer Ovarian epithelial cancer
15 genes
Show details
HNF1B(1), TERT(1), BCL11A(1), BNC2(1), MECOM(1), SGCZ(1), DLC1(1), RSPO1(1), ABO(1), CCDC170(1), NCAM2(1), BABAM1(1) +3 more
0.055 0.130 3.06e-12 3.50e-11 ✓ sig. —
Heterotaxy syndrome Visceral heterotaxy
4 genes
Show details
4 of 4 corroborated by 2+ sources
CIROZ(4), LEFTY2(2), DAW1(3), CFAP52(4)
0.174 1.000 3.12e-12 3.57e-11 ✓ sig. Cluster 46 →
Mucopolysaccharidosis Sanfilippo syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
NAGLU(7), SGSH(7), GNS(6), HGSNAT(7)
0.174 1.000 3.12e-12 3.57e-11 ✓ sig. Cluster 134 →
Cryptophthalmos syndrome Goldenhar syndrome
4 genes
Show details
RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.286 0.571 3.14e-12 3.58e-11 ✓ sig. Cluster 48 →
Cyclocephaly Goldenhar syndrome
4 genes
Show details
RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.286 0.571 3.14e-12 3.58e-11 ✓ sig. Cluster 48 →
Hereditary elliptocytosis Spherocytosis
4 genes
Show details
3 of 4 corroborated by 2+ sources
SPTA1(5), SPTB(4), SLC4A1(3), OR10Z1(1)
0.286 0.571 3.14e-12 3.58e-11 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.