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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Arrhythmogenic right ventricular cardiomyopathy Long qt syndrome
26 genes
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18 of 26 corroborated by 2+ sources
CACNB2(1), CTNNA3(7), DSG2(6), JUP(5), PKP2(7), RBM20(1), TRPM4(1), DSP(4), MYH6(1), RYR1(1), LMNA(2), RYR2(3) +14 more
0.202 0.500 3.05e-44 1.41e-42 ✓ sig. Cluster 3 →
X-linked complex neurodevelopmental disorder X-linked intellectual disability
22 genes
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22 of 22 corroborated by 2+ sources
FRMPD4(3), GRIA3(4), ARHGEF9(3), ARX(3), THOC2(5), PTCHD1(4), CNKSR2(4), AP1S2(4), IL1RAPL1(4), FTSJ1(3), IQSEC2(3), PCDH19(3) +10 more
0.250 0.629 4.43e-44 2.04e-42 ✓ sig. Cluster 113 →
Dilated cardiomyopathy Long qt syndrome
40 genes
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28 of 40 corroborated by 2+ sources
BRAF(1), CACNB2(1), CTNNA3(1), DSG2(7), JUP(1), KCNE2(7), PKP2(2), RBM20(8), TBX5(2), TRPM4(1), DSP(7), DPP6(1) +28 more
0.119 0.392 6.85e-44 3.14e-42 ✓ sig. Cluster 3 →
Bipolar disorder Obesity
238 genes
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100 of 238 corroborated by 2+ sources
SOX5(1), RERE(1), COMT(2), INS(2), WWOX(1), AGT(1), AKAP6(1), APOE(3), AS3MT(1), AUTS2(1), C6orf118(1), C8orf90(1) +226 more
0.109 0.199 6.84e-44 3.14e-42 ✓ sig. Cluster 2 →
Cytochrome c oxidase deficiency Mitochondrial complex deficiency
20 genes
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20 of 20 corroborated by 2+ sources
COX5A(5), LRPPRC(2), SCO2(5), SCO1(6), COA3(4), COA5(3), COA6(3), COX15(5), SURF1(5), COX14(5), FASTKD2(3), PET100(5) +8 more
0.167 1.000 1.08e-43 4.93e-42 ✓ sig. Cluster 50 →
Aplasia of the vermis Ciliopathy
24 genes
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23 of 24 corroborated by 2+ sources
WDPCP(3), CC2D2A(3), RPGRIP1L(3), TMEM67(3), SUFU(3), TMEM138(3), TMEM216(3), TMEM231(3), CEP120(3), IFT172(3), CEP41(2), IFT74(3) +12 more
0.235 0.444 1.36e-43 6.22e-42 ✓ sig. Cluster 8 →
Brugada syndrome Long qt syndrome
27 genes
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22 of 27 corroborated by 2+ sources
CACNB2(6), PKP2(4), SLMAP(4), TBX5(3), TRPM4(4), DSP(1), KCNJ2(2), CACNA1C(7), KCNH2(7), KCNQ1(7), RYR2(1), SCN5A(8) +15 more
0.194 0.429 1.42e-43 6.48e-42 ✓ sig. Cluster 3 →
Holoprosencephaly Septopreoptic holoprosencephaly
15 genes
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15 of 15 corroborated by 2+ sources
FGF8(3), CDON(6), GLI2(6), SHH(5), PTCH1(7), SIX3(6), GAS1(5), ZIC2(6), DLL1(3), STIL(3), DISP1(4), CRIPTO(4) +3 more
0.500 1.000 1.57e-43 7.14e-42 ✓ sig. Cluster 96 →
Holoprosencephaly Syntelencephaly
15 genes
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15 of 15 corroborated by 2+ sources
FGF8(3), CDON(6), GLI2(6), SHH(5), PTCH1(7), SIX3(6), GAS1(5), ZIC2(6), DLL1(3), STIL(3), DISP1(4), CRIPTO(4) +3 more
0.500 1.000 1.57e-43 7.14e-42 ✓ sig. Cluster 96 →
Dentin dysplasia Dentinogenesis imperfecta
14 genes
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1 of 14 corroborated by 2+ sources
SLC24A4(1), AMBN(1), AMELX(1), DLX3(1), ENAM(1), FAM20A(1), FAM83H(1), ITGB6(1), KLK4(1), LAMB3(1), MMP20(1), ODAPH(1) +2 more
0.700 0.875 1.70e-43 7.69e-42 ✓ sig. Cluster 369 →
Charcot-marie-tooth disease Peripheral neuropathy
39 genes
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33 of 39 corroborated by 2+ sources
DHTKD1(5), AARS1(7), SLC12A6(4), HINT1(4), MME(8), SBF2(7), NGF(1), DCTN1(2), DYNC1H1(5), KIF5A(4), MFN2(7), NEFH(5) +27 more
0.136 0.295 1.73e-43 7.82e-42 ✓ sig. —
Respiratory system disease Ulcerative colitis
72 genes
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8 of 72 corroborated by 2+ sources
CEBPA(1), RTEL1(1), CCR7(1), EMSY(1), ETS1(1), FADS1(1), FADS2(1), HINT1(1), HLA-DQA1(1), HLA-DRB1(3), IKZF1(3), IL6R(1) +60 more
0.092 0.299 1.77e-43 7.98e-42 ✓ sig. —
Breast neoplasms Colorectal neoplasms
73 genes
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1 of 73 corroborated by 2+ sources
DPYD(1), BMP2(1), COL7A1(1), CHEK2(2), TP53(1), ABCA8(1), ARID1A(1), ATP7B(1), EGFR(1), ESR2(1), EXO1(1), GPX4(1) +61 more
0.099 0.251 2.04e-43 9.19e-42 ✓ sig. —
Melanoma Ovarian serous carcinoma
66 genes
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18 of 66 corroborated by 2+ sources
ANKRD11(1), RREB1(1), MAP3K1(1), ACD(2), RTEL1(1), TERT(5), TP53(2), ASIP(2), BNC2(1), CDH15(1), EPB41L1(1), FOXP1(1) +54 more
0.103 0.244 2.49e-43 1.12e-41 ✓ sig. —
Diabetes mellitus Stroke
61 genes
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9 of 61 corroborated by 2+ sources
ANKRD26(1), ALDH1A2(1), ANKRD31(1), APOB(1), APOC1(1), BAZ1B(1), BCL3(1), CDKAL1(2), FADS1(1), FADS2(1), LIPC(1), MAML3(1) +49 more
0.109 0.206 2.88e-43 1.29e-41 ✓ sig. —
Peripheral vascular disease Vascular disease
20 genes
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CSTPP1(1), HDAC9(1), NFAT5(1), TCF7L2(1), ATXN2(1), CHRNA3(1), TWIST1(1), ABO(1), SLC19A2(1), CELSR2(1), LPA(1), PSRC1(1) +8 more
0.303 0.606 3.09e-43 1.38e-41 ✓ sig. Cluster 6 →
Age-related macular degeneration Macular degeneration
26 genes
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16 of 26 corroborated by 2+ sources
ABCA4(2), HMCN1(3), CFI(4), APOE(3), VEGFA(2), C2(3), C3(3), PON1(1), GSTM1(1), RAD51B(1), CFB(3), CRP(1) +14 more
0.208 0.388 3.10e-43 1.38e-41 ✓ sig. Cluster 186 →
Hydranencephaly Lissencephaly
18 genes
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1 of 18 corroborated by 2+ sources
CASK(1), ARL3(1), NDE1(6), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1) +6 more
0.327 0.818 3.58e-43 1.59e-41 ✓ sig. Cluster 109 →
Immune system disease Myasthenia gravis
20 genes
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5 of 20 corroborated by 2+ sources
FAM76B(1), HLA-DQA1(2), HLA-DRB1(2), TNIP1(1), TRPM1(1), ATXN2(1), POMC(2), TBX18(1), CEP43(1), CTLA4(1), HLA-B(2), PTPN22(2) +8 more
0.308 0.526 8.03e-43 3.56e-41 ✓ sig. Cluster 1 →
Cardiomyopathy Long qt syndrome
38 genes
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18 of 38 corroborated by 2+ sources
CTNNA3(1), DSG2(1), JUP(1), KCNE2(7), PKP2(1), RBM20(1), TRPM4(1), POMC(2), DSP(1), CACNA1C(6), MYH6(3), TMPO(1) +26 more
0.123 0.373 1.23e-42 5.46e-41 ✓ sig. Cluster 3 →
Cutaneous squamous cell carcinoma Skin neoplasms
25 genes
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2 of 25 corroborated by 2+ sources
BNC2(1), FOXP1(1), HLA-DQA1(1), ICOS(1), TRPS1(1), WEE1(1), ZNF143(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), AHR(1) +13 more
0.157 0.658 1.24e-42 5.48e-41 ✓ sig. Cluster 23 →
Congestive heart failure Kidney failure
46 genes
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20 of 46 corroborated by 2+ sources
INS(1), CAT(2), TP53(1), GATM(2), ACE(2), AGT(1), APOE(1), EPHX2(1), PRKAG2(2), SERPINE1(2), VEGFA(1), NOS3(1) +34 more
0.119 0.257 1.79e-42 7.90e-41 ✓ sig. Cluster 6 →
Breast neoplasms Lung neoplasms
68 genes
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3 of 68 corroborated by 2+ sources
WT1(1), DPYD(1), NOTCH2(1), PTEN(1), CHEK2(2), TERT(1), TP53(1), JAG1(1), EGFR(1), ERBB3(1), RARB(1), SPP1(1) +56 more
0.097 0.268 1.96e-42 8.62e-41 ✓ sig. Cluster 21 →
Holoprosencephaly Microform holoprosencephaly
15 genes
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15 of 15 corroborated by 2+ sources
FGF8(3), CDON(6), GLI2(6), SHH(5), PTCH1(7), SIX3(6), FGFR1(3), GAS1(5), ZIC2(6), DLL1(3), DISP1(4), CRIPTO(4) +3 more
0.484 0.938 2.52e-42 1.11e-40 ✓ sig. Cluster 96 →
Connective tissue disease Desbuquois syndrome
51 genes
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51 of 51 corroborated by 2+ sources
HSPG2(2), HDAC4(2), SOX9(2), TRIP11(2), SLC26A2(2), COL2A1(2), FGFR3(2), FBN1(2), NOTCH1(3), ALPL(2), PEX7(2), COL11A1(2) +39 more
0.080 0.436 4.08e-42 1.79e-40 ✓ sig. —

Showing 25 of 20825 pairs, sorted by significance (ascending). Click a column header to sort.