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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Delirium, dementia, and cognitive disorders Diabetes complications
5 genes
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5 of 5 corroborated by 2+ sources
ABCC4(2), SLC10A2(2), SLC51B(2), SLC51A(2), NR0B2(2)
0.078 0.417 4.12e-10 3.87e-9 ✓ sig. Cluster 351 →
Pancreatic neoplasms Pancreatitis
9 genes
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9 of 9 corroborated by 2+ sources
PTGS2(2), PTHLH(2), ABO(2), PTCH1(2), CNR2(2), CNR1(2), PRSS1(4), SPINK1(4), SST(3)
0.054 0.158 4.10e-10 3.86e-9 ✓ sig. —
Hypogonadotropic hypogonadism Pituitary stalk interruption syndrome
6 genes
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5 of 6 corroborated by 2+ sources
PROKR2(7), CHD7(5), WDR11(5), NSMF(6), SOX11(1), KISS1R(6)
0.082 0.194 4.04e-10 3.80e-9 ✓ sig. Cluster 54 →
Diabetic angiopathies Liver failure
6 genes
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6 of 6 corroborated by 2+ sources
ASS1(2), VEGFA(2), TNF(2), ALB(2), IL1RN(2), FASLG(2)
0.080 0.214 3.92e-10 3.69e-9 ✓ sig. Cluster 368 →
Diabetic peripheral angiopathy Liver failure
6 genes
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6 of 6 corroborated by 2+ sources
ASS1(2), VEGFA(2), TNF(2), ALB(2), IL1RN(2), FASLG(2)
0.080 0.214 3.92e-10 3.69e-9 ✓ sig. Cluster 368 →
Interstitial lung disease Obstructive airway disease
9 genes
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6 of 9 corroborated by 2+ sources
RTEL1(1), TERT(4), DSP(2), HLA-DPB1(2), IL1RN(1), SFTPC(4), FAM13A(2), SFTPA1(5), TOLLIP(1)
0.057 0.136 3.88e-10 3.66e-9 ✓ sig. —
Male infertility single gene azoospermia Premature ovarian failure
11 genes
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10 of 11 corroborated by 2+ sources
WT1(1), BNC1(4), NR5A1(6), STAG3(6), XRCC2(5), C14orf39(5), MSH5(6), FANCM(4), DNAH6(2), MEIOB(4), SYCE1(6)
0.052 0.103 3.83e-10 3.61e-9 ✓ sig. Cluster 31 →
Distal hereditary motor neuropathy Neuromuscular disease
6 genes
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5 of 6 corroborated by 2+ sources
SORD(4), TRPV4(5), LMNA(1), PLEKHG5(4), SPTAN1(3), VWA1(5)
0.085 0.167 3.82e-10 3.60e-9 ✓ sig. —
Primary microcephaly Seckel syndrome
5 genes
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5 of 5 corroborated by 2+ sources
CENPE(4), CDK5RAP2(4), CEP152(7), CEP63(5), CPAP(7)
0.102 0.278 3.78e-10 3.57e-9 ✓ sig. Cluster 101 →
Kidney and ureter calculus Urolithiasis
4 genes
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4 of 4 corroborated by 2+ sources
CASR(2), RGS14(2), SLC34A1(2), CYP24A1(2)
0.057 1.000 3.69e-10 3.49e-9 ✓ sig. —
Autoimmune polyendocrine syndrome Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. Cluster 1 →
Oropharyngeal neoplasms Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. Cluster 1 →
Complex cortical dysplasia with other brain malformations Tubulinopathy
3 genes
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3 of 3 corroborated by 2+ sources
TUBB2A(3), TUBB3(3), TUBB2B(5)
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. Cluster 176 →
Congenital foot deformity Congenital hand deformities
3 genes
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TP63(1), PTHLH(1), LMNA(1)
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. Cluster 27 →
Familial focal epilepsy with variable foci Focal epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
DEPDC5(5), NPRL2(6), NPRL3(5)
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. —
Imerslund-grasbeck syndrome Megaloblastic anemia
3 genes
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2 of 3 corroborated by 2+ sources
CUBN(7), AMN(5), CDC42BPB(1)
0.231 1.000 3.62e-10 3.42e-9 ✓ sig. Cluster 106 →
Cerebral venous sinus thrombosis Thromboembolism
3 genes
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3 of 3 corroborated by 2+ sources
PLAU(2), F5(2), PROS1(2)
0.231 1.000 3.62e-10 3.42e-9 ✓ sig. —
Cardiofaciocutaneous syndrome Schimmelpenning-feuerstein-mims syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KRAS(8), NRAS(3), HRAS(3)
0.231 1.000 3.62e-10 3.42e-9 ✓ sig. —
Hypertension Venous thromboembolism
60 genes
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15 of 60 corroborated by 2+ sources
ZFPM2(1), SH2B3(1), SPI1(1), CSMD1(1), CUX2(1), DCHS2(1), LRAT(1), MSRA(1), NUP160(1), PLCG2(1), PSMC3(1), SERPINE1(3) +48 more
0.042 0.175 3.60e-10 3.41e-9 ✓ sig. Cluster 78 →
Fanconi anemia Premature ovarian failure
8 genes
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6 of 8 corroborated by 2+ sources
XRCC2(7), AOPEP(1), ERCC4(6), FANCM(7), POLG(1), FANCC(8), FANCA(7), RAD51C(7)
0.055 0.205 3.58e-10 3.39e-9 ✓ sig. —
Hypopituitarism Pituitary stalk interruption syndrome
6 genes
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1 of 6 corroborated by 2+ sources
ROBO1(2), PROKR2(1), CHD7(1), WDR11(1), NSMF(1), KISS1R(1)
0.083 0.194 3.53e-10 3.35e-9 ✓ sig. Cluster 54 →
Cognition disorder Diabetes complications
5 genes
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5 of 5 corroborated by 2+ sources
ABCC4(2), SLC10A2(2), SLC51B(2), SLC51A(2), NR0B2(2)
0.081 0.417 3.41e-10 3.24e-9 ✓ sig. Cluster 351 →
Cerebrooculofacioskeletal syndrome Xeroderma pigmentosum-cockayne syndrome
3 genes
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2 of 3 corroborated by 2+ sources
ERCC2(6), BIVM-ERCC5(1), ERCC5(6)
0.333 0.600 3.29e-10 3.12e-9 ✓ sig. Cluster 86 →
Methemoglobinemia Thalassemia
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(5), HBA2(2), HBB(4)
0.333 0.600 3.29e-10 3.12e-9 ✓ sig. Cluster 72 →
Cutaneous squamous cell carcinoma Seborrheic dermatitis
6 genes
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FOXP1(1), RALY(1), IRF4(1), TYR(1), MC1R(1), SLC45A2(1)
0.086 0.162 3.28e-10 3.12e-9 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.