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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital arteriovenous malformation Epidermal nevus
3 genes
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2 of 3 corroborated by 2+ sources
HRAS(3), PIK3CA(3), LRRC56(1)
0.214 0.429 4.83e-9 4.08e-8 ✓ sig. Cluster 18 →
Mycosis fungoides Sezary syndrome
3 genes
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1 of 3 corroborated by 2+ sources
CD28(1), CTLA4(1), TNFRSF1B(2)
0.107 1.000 4.81e-9 4.06e-8 ✓ sig. —
Scleroderma Stevens-johnson syndrome
6 genes
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6 of 6 corroborated by 2+ sources
TAP2(2), CAV1(2), HLA-DQB1(2), CSF3(2), PSORS1C1(2), HLA-A(2)
0.059 0.214 4.79e-9 4.05e-8 ✓ sig. —
Autosomal recessive ataxia Zellweger spectrum disorder
3 genes
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3 of 3 corroborated by 2+ sources
PEX10(4), PEX16(3), PEX2(3)
0.188 0.600 4.70e-9 3.97e-8 ✓ sig. —
Basal ganglia disease Disruptive impulse-control and conduct disorder
3 genes
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3 of 3 corroborated by 2+ sources
PRL(2), DRD2(2), DRD3(2)
0.188 0.600 4.70e-9 3.97e-8 ✓ sig. —
Cortical dysplasia with other brain malformations Tubulinopathy
3 genes
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3 of 3 corroborated by 2+ sources
TUBB2A(5), TUBB3(4), TUBB2B(5)
0.158 0.750 4.47e-9 3.78e-8 ✓ sig. Cluster 176 →
Bronchiectasis Liddle syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SCNN1A(6), SCNN1B(6), SCNN1G(8)
0.158 0.750 4.47e-9 3.78e-8 ✓ sig. Cluster 95 →
Brain ischemia Non-neoplastic peripheral nervous system disease
7 genes
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5 of 7 corroborated by 2+ sources
ICAM1(2), IGF1(1), SOD2(2), IL6(2), CSF3(1), JUN(2), CASP9(2)
0.059 0.130 4.41e-9 3.74e-8 ✓ sig. —
Central nervous system non-hodgkin lymphoma Lymphoma
4 genes
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HLA-DQA1(1), HLA-DRB1(1), EXOC2(1), IRF4(1)
0.070 0.571 4.34e-9 3.68e-8 ✓ sig. Cluster 1 →
Lymphoma Uveomeningoencephalitic syndrome
4 genes
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3 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-DQB1(2), IFNA2(1)
0.070 0.571 4.34e-9 3.68e-8 ✓ sig. Cluster 1 →
Congenital communicating hydrocephalus Hydrocephalus
3 genes
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3 of 3 corroborated by 2+ sources
MPDZ(2), WDR81(2), TRIM71(2)
0.111 1.000 4.27e-9 3.63e-8 ✓ sig. Cluster 293 →
Mitochondrial myopathy Polymyositis
4 genes
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4 of 4 corroborated by 2+ sources
IL1A(2), IL1B(2), TNF(2), IL6(2)
0.118 0.267 4.22e-9 3.58e-8 ✓ sig. —
Aplasia of the vermis Polydactyly
6 genes
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1 of 6 corroborated by 2+ sources
KIF7(1), CPLANE1(1), CC2D2A(1), KIAA0586(2), MKS1(1), OFD1(1)
0.068 0.154 4.17e-9 3.54e-8 ✓ sig. Cluster 8 →
Sezary syndrome T-cell leukemia-lymphoma
5 genes
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2 of 5 corroborated by 2+ sources
CARD11(1), CD28(2), CTLA4(2), PLCG1(1), CCR4(1)
0.085 0.185 4.07e-9 3.46e-8 ✓ sig. —
Arrhythmogenic right ventricular cardiomyopathy Neuromuscular disease
6 genes
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4 of 6 corroborated by 2+ sources
ACTN2(1), RYR1(1), LMNA(2), LDB3(2), MYH7(3), TTN(2)
0.069 0.150 3.87e-9 3.29e-8 ✓ sig. —
Brain ischemia Peripheral nervous system disease
7 genes
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7 of 7 corroborated by 2+ sources
ICAM1(2), IGF1(2), SOD2(2), IL6(2), CSF3(2), JUN(2), CASP9(2)
0.060 0.132 3.85e-9 3.28e-8 ✓ sig. —
Hodgkin lymphoma Hyperthyroidism
8 genes
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1 of 8 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(1), HLA-DQB1(2), PTPN22(1), NCOA5(1), LPP(1), TSBP1(1)
0.051 0.151 3.82e-9 3.25e-8 ✓ sig. —
Bilateral perisylvian polymicrogyria Polymicrogyria
3 genes
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3 of 3 corroborated by 2+ sources
PI4KA(3), ADGRG1(4), SRPX2(2)
0.115 1.000 3.78e-9 3.22e-8 ✓ sig. —
Partial epilepsy Rolandic epilepsy
6 genes
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3 of 6 corroborated by 2+ sources
GRIN2A(3), SCN1A(2), SCN2A(1), DEPDC5(1), KCNT1(2), SPTAN1(1)
0.070 0.136 3.76e-9 3.20e-8 ✓ sig. —
Narcolepsy Pemphigus vulgaris
4 genes
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3 of 4 corroborated by 2+ sources
0.073 0.571 3.71e-9 3.16e-8 ✓ sig. Cluster 1 →
Congenital fibrosis of extraocular muscles Tubulinopathy
3 genes
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3 of 3 corroborated by 2+ sources
TUBB3(4), TUBB2B(4), TUBA1A(3)
0.167 0.750 3.68e-9 3.13e-8 ✓ sig. Cluster 176 →
Basal cell nevus syndrome Microform holoprosencephaly
3 genes
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3 of 3 corroborated by 2+ sources
GLI2(3), PTCH1(5), SUFU(5)
0.167 0.750 3.68e-9 3.13e-8 ✓ sig. —
Methylmalonic acidemia Vitamin b deficiency
4 genes
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4 of 4 corroborated by 2+ sources
CD320(7), MMAA(8), ABCD4(7), MMUT(8)
0.111 0.333 3.67e-9 3.13e-8 ✓ sig. —
Lymphocytic b-cell leukemia Lymphoid leukemia
5 genes
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5 of 5 corroborated by 2+ sources
TP53(2), IRF4(2), SP140(2), ACOXL(2), BMF(2)
0.086 0.179 3.66e-9 3.12e-8 ✓ sig. Cluster 225 →
Berylliosis Uveitis
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DRB1(2), TNF(2), IL6(2), TGFB1(2)
0.100 0.400 3.64e-9 3.10e-8 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.