Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Myasthenia gravis Nasopharyngeal neoplasms
5 genes
Show details
4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-DQB1(2), HLA-B(2), C6orf15(1)
0.065 0.132 6.26e-8 4.55e-7 ✓ sig. Cluster 1 →
Endometrial neoplasms Pancreatic neoplasms
10 genes
Show details
3 of 10 corroborated by 2+ sources
HNF1B(2), PTEN(1), MSH6(2), PPARG(2), CXCL8(1), CNR2(1), CNR1(1), TNFSF10(1), CDH1(1), MYC(1)
0.042 0.085 6.24e-8 4.53e-7 ✓ sig. —
Cystic fibrosis Cystic fibrosis-related diabetes
3 genes
Show details
1 of 3 corroborated by 2+ sources
CEBPB(1), RAB7B(1), SLC26A9(4)
0.048 1.000 6.22e-8 4.52e-7 ✓ sig. —
Adenoid cystic carcinoma Coffin-siris syndrome
5 genes
Show details
5 of 5 corroborated by 2+ sources
ARID1A(5), SMARCA2(2), SMARCE1(7), SOX4(6), SOX11(4)
0.044 0.294 6.08e-8 4.42e-7 ✓ sig. —
Congenital fiber type disproportion myopathy Congenital structural myopathy
3 genes
Show details
1 of 3 corroborated by 2+ sources
MTM1(1), RYR1(1), TPM3(3)
0.143 0.273 5.95e-8 4.33e-7 ✓ sig. Cluster 189 →
Autoimmune musculoskeletal system disorder Cutaneous lupus erythematosus
3 genes
Show details
HLA-DQA1(1), HLA-DRB1(1), ITGAM(1)
0.143 0.273 5.95e-8 4.33e-7 ✓ sig. Cluster 1 →
Hyperhomocysteinemia Neural tube defect
4 genes
Show details
4 of 4 corroborated by 2+ sources
MTHFR(2), MTRR(2), CBS(2), MTR(2)
0.069 0.308 5.82e-8 4.24e-7 ✓ sig. —
Costello syndrome Myelomonocytic leukemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
KRAS(4), NRAS(4), PTPN11(6)
0.143 0.300 5.62e-8 4.10e-7 ✓ sig. Cluster 42 →
Occupational disease Pleural diseases
3 genes
Show details
2 of 3 corroborated by 2+ sources
TIMP2(2), TGFB1(2), CARD8(1)
0.143 0.300 5.62e-8 4.10e-7 ✓ sig. Cluster 126 →
Aortic disease Bonnevie-ullrich syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
CAT(2), SOD2(2), SOD1(2)
0.125 0.429 5.56e-8 4.05e-7 ✓ sig. Cluster 285 →
Cerebellar atrophy Dandy-walker syndrome
4 genes
Show details
HYLS1(1), PUS3(1), MAGED2(1), TMEM47(1)
0.085 0.200 5.55e-8 4.05e-7 ✓ sig. —
Cecal neoplasms Uterine neoplasms
3 genes
Show details
CTNNB1(1), KRAS(1), CCND1(1)
0.075 0.750 5.54e-8 4.04e-7 ✓ sig. —
Cardiac embolism Glaucoma
9 genes
Show details
3 of 9 corroborated by 2+ sources
GLIS3(2), KCNN3(1), RBFOX1(1), CAV2(3), ABO(1), TEK(5), GRM5(1), HNRNPA1L3(1), TYR(1)
0.033 0.180 5.40e-8 3.94e-7 ✓ sig. —
Nasopharyngeal carcinoma Sezary syndrome
4 genes
Show details
1 of 4 corroborated by 2+ sources
PTEN(1), TP53(3), ARID1A(1), CDKN2A(1)
0.087 0.182 5.37e-8 3.92e-7 ✓ sig. Cluster 3 →
Byzanthine arch palate Mitral valve prolapse
4 genes
Show details
FBN1(1), PLOD1(1), NSDHL(1), MAP2K2(1)
0.070 0.308 5.34e-8 3.90e-7 ✓ sig. —
Bronchial disease Bronchitis
4 genes
Show details
CASP14(1), HOMEZ(1), PPP2R5E(1), TEKTL1(1)
0.083 0.222 5.24e-8 3.83e-7 ✓ sig. Cluster 1 →
Hemangiosarcoma Transitional cell carcinoma
4 genes
Show details
TP53(1), CSF3(1), HRAS(1), CCND1(1)
0.083 0.222 5.24e-8 3.83e-7 ✓ sig. —
Cystitis Interstitial cystitis
4 genes
Show details
4 of 4 corroborated by 2+ sources
NGF(2), CXCL10(2), CXCL9(2), CXCL11(2)
0.077 0.267 5.22e-8 3.82e-7 ✓ sig. —
Complex cortical dysplasia with other brain malformations Congenital fibrosis of extraocular muscles
3 genes
Show details
3 of 3 corroborated by 2+ sources
TUBB(3), TUBB3(4), TUBB2B(6)
0.136 0.375 5.14e-8 3.76e-7 ✓ sig. Cluster 176 →
Body mass index Body weight
3 genes
Show details
3 of 3 corroborated by 2+ sources
FTO(2), MC4R(3), PCSK1(2)
0.136 0.375 5.14e-8 3.76e-7 ✓ sig. —
Crest syndrome Scleroderma
4 genes
Show details
4 of 4 corroborated by 2+ sources
CAV1(2), IRF5(3), STAT4(3), CCN2(2)
0.087 0.190 5.12e-8 3.75e-7 ✓ sig. Cluster 25 →
Autoinflammatory syndrome Hyper-immunoglobulin d syndrome
3 genes
Show details
1 of 3 corroborated by 2+ sources
MVK(3), HMGCR(1), MMAB(1)
0.077 0.750 5.10e-8 3.74e-7 ✓ sig. —
Arteriovenous hemangioma Blue rubber bleb nevus syndrome
2 genes
Show details
1 of 2 corroborated by 2+ sources
GLMN(1), TEK(2)
0.400 1.000 5.06e-8 3.71e-7 ✓ sig. Cluster 261 →
Asymmetric septal hypertrophy Scapuloperoneal myopathy
2 genes
Show details
1 of 2 corroborated by 2+ sources
MYH7(1), FHL1(3)
0.400 1.000 5.06e-8 3.71e-7 ✓ sig. Cluster 89 →
Axenfeld anomaly Rieger syndrome
2 genes
Show details
2 of 2 corroborated by 2+ sources
FOXC1(2), PITX2(2)
0.400 1.000 5.06e-8 3.71e-7 ✓ sig. Cluster 253 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.