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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Carney complex Paraganglioma
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(4), SDHA(2), SDHC(4)
0.231 0.429 3.22e-9 2.76e-8 ✓ sig. Cluster 81 →
Carney complex Pheochromocytoma/paraganglioma syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(6), SDHA(6), SDHC(4)
0.231 0.429 3.22e-9 2.76e-8 ✓ sig. Cluster 81 →
Lung disease Pancreatitis
8 genes
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7 of 8 corroborated by 2+ sources
SERPINA1(3), MPO(2), PTGS2(2), PTHLH(2), HGF(2), HTR4(1), ADRB2(3), CFTR(3)
0.053 0.140 3.28e-9 2.81e-8 ✓ sig. —
Diabetic retinopathy Proliferative diabetic retinopathy
8 genes
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2 of 8 corroborated by 2+ sources
NRXN3(1), RBFOX1(1), SERPINE1(1), SERPINF1(1), PPARG(2), HLA-B(2), GOLIM4(1), STUM(1)
0.041 0.222 3.28e-9 2.81e-8 ✓ sig. —
complex neurodevelopmental disorder Houge janssens syndrome
4 genes
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4 of 4 corroborated by 2+ sources
PPP2CA(5), PPP2R5C(2), PPP2R1A(5), PPP2R5D(3)
0.034 1.000 3.28e-9 2.81e-8 ✓ sig. —
Double outlet right ventricle Ventricular septal defect
4 genes
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2 of 4 corroborated by 2+ sources
NKX2-5(3), ISL1(1), MYCN(1), YES1(2)
0.085 0.500 3.32e-9 2.84e-8 ✓ sig. —
Progressive myoclonic epilepsy Unverricht-lundborg syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SCARB2(6), PRICKLE1(7), CSTB(6)
0.120 1.000 3.33e-9 2.85e-8 ✓ sig. Cluster 329 →
Atrial standstill Hereditary atrial fibrillation
3 genes
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3 of 3 corroborated by 2+ sources
NPPA(5), SCN5A(3), GJA5(5)
0.120 1.000 3.33e-9 2.85e-8 ✓ sig. —
Ap-4 deficiency syndrome Spastic paraplegia
4 genes
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4 of 4 corroborated by 2+ sources
AP4M1(4), AP4B1(5), AP4E1(5), AP4S1(5)
0.033 1.000 3.51e-9 3.00e-8 ✓ sig. —
Ap4-related intellectual disability and spastic paraplegia Spastic paraplegia
4 genes
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4 of 4 corroborated by 2+ sources
AP4M1(3), AP4B1(4), AP4E1(4), AP4S1(4)
0.033 1.000 3.51e-9 3.00e-8 ✓ sig. —
Central vertigo Vestibular disease
3 genes
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OTOGL(1), LYAR(1), TMEM128(1)
0.200 0.600 3.61e-9 3.09e-8 ✓ sig. —
Peripheral vertigo Vestibular disease
3 genes
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OTOGL(1), LYAR(1), TMEM128(1)
0.200 0.600 3.61e-9 3.09e-8 ✓ sig. —
Berylliosis Uveitis
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DRB1(2), TNF(2), IL6(2), TGFB1(2)
0.100 0.400 3.64e-9 3.10e-8 ✓ sig. —
Delirium Hyperkinesia
4 genes
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4 of 4 corroborated by 2+ sources
DRD2(2), DRD3(2), SLC6A3(2), TH(2)
0.100 0.400 3.64e-9 3.10e-8 ✓ sig. —
Lymphocytic b-cell leukemia Lymphoid leukemia
5 genes
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5 of 5 corroborated by 2+ sources
TP53(2), IRF4(2), SP140(2), ACOXL(2), BMF(2)
0.086 0.179 3.66e-9 3.12e-8 ✓ sig. Cluster 225 →
Methylmalonic acidemia Vitamin b deficiency
4 genes
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4 of 4 corroborated by 2+ sources
CD320(7), MMAA(8), ABCD4(7), MMUT(8)
0.111 0.333 3.67e-9 3.13e-8 ✓ sig. —
Basal cell nevus syndrome Microform holoprosencephaly
3 genes
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3 of 3 corroborated by 2+ sources
GLI2(3), PTCH1(5), SUFU(5)
0.167 0.750 3.68e-9 3.13e-8 ✓ sig. —
Congenital fibrosis of extraocular muscles Tubulinopathy
3 genes
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3 of 3 corroborated by 2+ sources
TUBB3(4), TUBB2B(4), TUBA1A(3)
0.167 0.750 3.68e-9 3.13e-8 ✓ sig. Cluster 176 →
Narcolepsy Pemphigus vulgaris
4 genes
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3 of 4 corroborated by 2+ sources
0.073 0.571 3.71e-9 3.16e-8 ✓ sig. Cluster 1 →
Partial epilepsy Rolandic epilepsy
6 genes
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3 of 6 corroborated by 2+ sources
GRIN2A(3), SCN1A(2), SCN2A(1), DEPDC5(1), KCNT1(2), SPTAN1(1)
0.070 0.136 3.76e-9 3.20e-8 ✓ sig. —
Bilateral perisylvian polymicrogyria Polymicrogyria
3 genes
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3 of 3 corroborated by 2+ sources
PI4KA(3), ADGRG1(4), SRPX2(2)
0.115 1.000 3.78e-9 3.22e-8 ✓ sig. —
Hodgkin lymphoma Hyperthyroidism
8 genes
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1 of 8 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(1), HLA-DQB1(2), PTPN22(1), NCOA5(1), LPP(1), TSBP1(1)
0.051 0.151 3.82e-9 3.25e-8 ✓ sig. —
Brain ischemia Peripheral nervous system disease
7 genes
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7 of 7 corroborated by 2+ sources
ICAM1(2), IGF1(2), SOD2(2), IL6(2), CSF3(2), JUN(2), CASP9(2)
0.060 0.132 3.85e-9 3.28e-8 ✓ sig. —
Arrhythmogenic right ventricular cardiomyopathy Neuromuscular disease
6 genes
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4 of 6 corroborated by 2+ sources
ACTN2(1), RYR1(1), LMNA(2), LDB3(2), MYH7(3), TTN(2)
0.069 0.150 3.87e-9 3.29e-8 ✓ sig. —
Sezary syndrome T-cell leukemia-lymphoma
5 genes
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2 of 5 corroborated by 2+ sources
CARD11(1), CD28(2), CTLA4(2), PLCG1(1), CCR4(1)
0.085 0.185 4.07e-9 3.46e-8 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.