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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital total cataract Lamellar cataract
4 genes
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4 of 4 corroborated by 2+ sources
CRYAA(3), HSF4(3), MIP(3), CRYGB(3)
0.167 0.364 2.55e-10 2.44e-9 ✓ sig. Cluster 43 →
Splenic disease Splenomegaly
4 genes
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4 of 4 corroborated by 2+ sources
CYP1A2(2), FAS(2), APC(2), AHR(2)
0.154 0.444 2.60e-10 2.48e-9 ✓ sig. —
Exudative vitreoretinopathy Retinopathy of prematurity
4 genes
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3 of 4 corroborated by 2+ sources
PRSS23(1), FZD4(6), NDP(5), LRP5(5)
0.154 0.444 2.60e-10 2.48e-9 ✓ sig. Cluster 288 →
Platelet-type bleeding disorder Von willebrand disorder
4 genes
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4 of 4 corroborated by 2+ sources
ITGA2(2), ITGA2B(5), P2RY12(6), GP6(7)
0.154 0.444 2.60e-10 2.48e-9 ✓ sig. —
Bullous pemphigoid Pemphigus
4 genes
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3 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(3), IL2(1), HLA-DQB1(3)
0.143 0.500 2.64e-10 2.52e-9 ✓ sig. Cluster 1 →
Right atrial isomerism Transposition of the great arteries
3 genes
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1 of 3 corroborated by 2+ sources
UPF1(1), CERS1(1), GDF1(4)
0.250 1.000 2.71e-10 2.59e-9 ✓ sig. Cluster 113 →
Digenic alport syndrome Hematuria
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(2), COL4A3(5), COL4A4(6)
0.250 1.000 2.71e-10 2.59e-9 ✓ sig. Cluster 49 →
Autoimmune hepatitis T-cell leukemia-lymphoma
6 genes
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6 of 6 corroborated by 2+ sources
ICOS(2), IL10(2), IL2(2), IL4(2), IFNG(2), CTLA4(2)
0.087 0.167 2.76e-10 2.63e-9 ✓ sig. —
Anorexia Hyperkinesia
5 genes
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5 of 5 corroborated by 2+ sources
GCG(2), IL2(2), NPY(2), CRHR1(2), CCK(2)
0.106 0.278 2.77e-10 2.64e-9 ✓ sig. —
Pena-shokeir syndrome Postsynaptic congenital myasthenic syndrome
5 genes
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5 of 5 corroborated by 2+ sources
SCN4A(3), RAPSN(3), CHRND(3), MUSK(4), DOK7(2)
0.083 0.417 2.80e-10 2.67e-9 ✓ sig. —
Liver neoplasms Neuroblastoma
14 genes
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3 of 14 corroborated by 2+ sources
TERT(1), TP53(2), HLA-DQA1(1), ESR1(1), TNF(1), FHIT(2), TRIO(2), KRAS(1), HGF(1), TNFSF10(1), MYC(1), CDKN2A(1) +2 more
0.048 0.093 2.82e-10 2.68e-9 ✓ sig. Cluster 5 →
Bladder cancer Urinary bladder cancer
4 genes
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4 of 4 corroborated by 2+ sources
FGFR3(3), KRAS(2), RB1(2), HRAS(2)
0.060 1.000 3.08e-10 2.93e-9 ✓ sig. —
Optic neuropathy Postaxial polydactyly
4 genes
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ND1(1), ATP6(1), ATP8(1), ND4(1)
0.148 0.444 3.21e-10 3.05e-9 ✓ sig. Cluster 32 →
Cutaneous squamous cell carcinoma Seborrheic dermatitis
6 genes
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FOXP1(1), RALY(1), IRF4(1), TYR(1), MC1R(1), SLC45A2(1)
0.086 0.162 3.28e-10 3.12e-9 ✓ sig. —
Methemoglobinemia Thalassemia
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(5), HBA2(2), HBB(4)
0.333 0.600 3.29e-10 3.12e-9 ✓ sig. Cluster 72 →
Cerebrooculofacioskeletal syndrome Xeroderma pigmentosum-cockayne syndrome
3 genes
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2 of 3 corroborated by 2+ sources
ERCC2(6), BIVM-ERCC5(1), ERCC5(6)
0.333 0.600 3.29e-10 3.12e-9 ✓ sig. Cluster 86 →
Cognition disorder Diabetes complications
5 genes
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5 of 5 corroborated by 2+ sources
ABCC4(2), SLC10A2(2), SLC51B(2), SLC51A(2), NR0B2(2)
0.081 0.417 3.41e-10 3.24e-9 ✓ sig. Cluster 351 →
Hypopituitarism Pituitary stalk interruption syndrome
6 genes
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1 of 6 corroborated by 2+ sources
ROBO1(2), PROKR2(1), CHD7(1), WDR11(1), NSMF(1), KISS1R(1)
0.083 0.194 3.53e-10 3.35e-9 ✓ sig. Cluster 54 →
Fanconi anemia Premature ovarian failure
8 genes
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6 of 8 corroborated by 2+ sources
XRCC2(7), AOPEP(1), ERCC4(6), FANCM(7), POLG(1), FANCC(8), FANCA(7), RAD51C(7)
0.055 0.205 3.58e-10 3.39e-9 ✓ sig. —
Hypertension Venous thromboembolism
60 genes
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15 of 60 corroborated by 2+ sources
ZFPM2(1), SH2B3(1), SPI1(1), CSMD1(1), CUX2(1), DCHS2(1), LRAT(1), MSRA(1), NUP160(1), PLCG2(1), PSMC3(1), SERPINE1(3) +48 more
0.042 0.175 3.60e-10 3.41e-9 ✓ sig. Cluster 78 →
Cerebral venous sinus thrombosis Thromboembolism
3 genes
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3 of 3 corroborated by 2+ sources
PLAU(2), F5(2), PROS1(2)
0.231 1.000 3.62e-10 3.42e-9 ✓ sig. —
Imerslund-grasbeck syndrome Megaloblastic anemia
3 genes
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2 of 3 corroborated by 2+ sources
CUBN(7), AMN(5), CDC42BPB(1)
0.231 1.000 3.62e-10 3.42e-9 ✓ sig. Cluster 106 →
Cardiofaciocutaneous syndrome Schimmelpenning-feuerstein-mims syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KRAS(8), NRAS(3), HRAS(3)
0.231 1.000 3.62e-10 3.42e-9 ✓ sig. —
Autoimmune polyendocrine syndrome Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. Cluster 1 →
Oropharyngeal neoplasms Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.