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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hyperglycemia monogenic diabetes
5 genes
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5 of 5 corroborated by 2+ sources
INS(3), GCK(3), HNF1A(3), PDX1(2), NEUROD1(2)
0.086 0.500 8.97e-11 8.99e-10 ✓ sig. Cluster 36 →
Lynch syndrome Muir-torre syndrome
4 genes
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4 of 4 corroborated by 2+ sources
MSH2(8), MSH6(8), PMS2(7), MLH1(8)
0.080 1.000 9.05e-11 9.07e-10 ✓ sig. Cluster 166 →
Henoch schoenlein purpura Pemphigus
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), C3(2), HLA-DQB1(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 1 →
Aortic dissection Thoracoabdominal aortic aneurysm
4 genes
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3 of 4 corroborated by 2+ sources
FBN1(1), AGT(2), SMAD3(2), TGFBR2(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 66 →
Aortic dissection Ruptured abdominal aortic aneurysm
4 genes
Show details
3 of 4 corroborated by 2+ sources
FBN1(1), AGT(2), SMAD3(2), TGFBR2(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 66 →
Aortic dissection Ruptured aortic aneurysm
4 genes
Show details
3 of 4 corroborated by 2+ sources
FBN1(1), AGT(2), SMAD3(2), TGFBR2(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 66 →
Aortic dissection Ruptured thoracic aortic aneurysm
4 genes
Show details
3 of 4 corroborated by 2+ sources
FBN1(1), AGT(2), SMAD3(2), TGFBR2(2)
0.174 0.500 9.12e-11 9.12e-10 ✓ sig. Cluster 66 →
Endometrial neoplasms Ovarian neoplasms
13 genes
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3 of 13 corroborated by 2+ sources
PTEN(1), NPAS3(1), AKT1(2), CXCL8(1), TNFSF10(1), CDH1(1), MYC(1), GALNT3(2), BIRC5(1), EZH2(1), ZEB1(1), SKAP1(2) +1 more
0.052 0.099 9.13e-11 9.13e-10 ✓ sig. —
Citrullinemia Urea cycle disorder
3 genes
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3 of 3 corroborated by 2+ sources
ASS1(7), SLC25A15(2), SLC25A13(3)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. Cluster 367 →
Liposarcoma Well-differentiated liposarcoma
3 genes
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1 of 3 corroborated by 2+ sources
HMGA2(1), CDK4(2), MDM2(1)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. Cluster 342 →
Atypical hemolytic uremic syndrome Mesangiocapillary glomerulonephritis
3 genes
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3 of 3 corroborated by 2+ sources
CFI(2), CD46(3), CFH(3)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Bare lymphocyte syndrome MHC class I deficiency
3 genes
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3 of 3 corroborated by 2+ sources
TAP2(2), TAP1(3), TAPBP(2)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Benign adult familial myoclonic epilepsy Familial adult myoclonic epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
ADRA2B(2), SAMD12(5), STARD7(5)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. Cluster 357 →
Hemoglobin m disease Secondary polycythemia
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(3), HBA2(2), HBB(4)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Secondary polycythemia Unstable hemoglobin disease
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(4), HBA2(4), HBB(4)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Bouillaud’s disease Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. Cluster 1 →
C1q deficiency Complement pathway abnormality
3 genes
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3 of 3 corroborated by 2+ sources
C1QA(5), C1QB(5), C1QC(4)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Calcium metabolism disorders Hypocalciuric hypercalcemia
3 genes
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3 of 3 corroborated by 2+ sources
AP2S1(5), GNA11(6), CASR(7)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Dyskinesia, drug-induced Hyperkinesia
5 genes
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5 of 5 corroborated by 2+ sources
DRD1(2), DRD2(2), DRD3(2), CCK(2), TH(2)
0.114 0.333 9.74e-11 9.68e-10 ✓ sig. Cluster 13 →
Basal ganglia disease Idiopathic basal ganglia calcification
4 genes
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4 of 4 corroborated by 2+ sources
PDGFRB(5), XPR1(5), PDGFB(5), SLC20A2(5)
0.190 0.364 1.00e-10 9.98e-10 ✓ sig. Cluster 390 →
Delirium, dementia, and cognitive disorders Hypotension
8 genes
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8 of 8 corroborated by 2+ sources
INS(2), AGT(2), NKAIN2(2), CRH(2), MAOA(2), DRD2(2), CNR1(2), VIP(2)
0.069 0.143 1.01e-10 9.98e-10 ✓ sig. —
Joubert syndrome Polydactyly
7 genes
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5 of 7 corroborated by 2+ sources
KIF7(1), CPLANE1(6), CC2D2A(5), SMAD6(1), KIAA0586(6), MKS1(6), OFD1(6)
0.077 0.179 1.04e-10 1.03e-9 ✓ sig. Cluster 8 →
Genetic predisposition to disease Head and neck neoplasms
7 genes
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2 of 7 corroborated by 2+ sources
IL1B(2), GPX1(1), RAD51(1), ADH1C(2), BAP1(1), XRCC3(1), TGFA(1)
0.079 0.149 1.04e-10 1.03e-9 ✓ sig. —
Kallmann syndrome Pituitary stalk interruption syndrome
6 genes
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4 of 6 corroborated by 2+ sources
HESX1(2), PROKR2(3), CHD7(4), WDR11(3), NSMF(1), KISS1R(1)
0.094 0.194 1.05e-10 1.04e-9 ✓ sig. Cluster 54 →
Muscular dystrophy muscular dystrophy, limb-girdle, autosomal dominant
4 genes
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4 of 4 corroborated by 2+ sources
TNPO3(2), CAPN3(2), DNAJB6(2), HNRNPDL(2)
0.077 1.000 1.07e-10 1.06e-9 ✓ sig. Cluster 14 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.