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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Dravet syndrome Myoclonic epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
GABRA1(2), SCN1A(6), STXBP1(3)
0.100 0.375 1.85e-7 1.23e-6 ✓ sig. Cluster 47 →
Intellectual developmental disorder, x-linked X-linked syndromic complex neurodevelopmental disorder
3 genes
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3 of 3 corroborated by 2+ sources
AP1S2(2), TFE3(5), ZFX(5)
0.033 1.000 1.87e-7 1.24e-6 ✓ sig. Cluster 115 →
Marfan syndrome Mitral valve prolapse
5 genes
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4 of 5 corroborated by 2+ sources
FBN1(7), LTBP3(2), COL5A1(2), FLNA(1), LTBP2(2)
0.058 0.116 1.88e-7 1.25e-6 ✓ sig. Cluster 12 →
Intervertebral disc disease Marshall syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL11A1(6), COL9A2(2), COL9A3(3)
0.111 0.300 1.90e-7 1.26e-6 ✓ sig. —
Diffuse large b-cell lymphoma Waldenstrom macroglobulinemia
3 genes
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1 of 3 corroborated by 2+ sources
EXOC2(1), IRF4(1), MYD88(2)
0.051 0.750 1.92e-7 1.28e-6 ✓ sig. Cluster 1 →
Genetic predisposition to disease Substance-induced psychosis
4 genes
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ACE(1), ESR1(1), ADORA2A(1), SLC6A3(1)
0.065 0.235 1.92e-7 1.28e-6 ✓ sig. —
Pancreatic ductal carcinoma Urethral obstruction
4 genes
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RELA(1), HEY1(1), HEY2(1), HES1(1)
0.074 0.154 1.95e-7 1.29e-6 ✓ sig. Cluster 153 →
Generalized epilepsy with febrile seizures plus Lennox-gastaut syndrome
3 genes
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3 of 3 corroborated by 2+ sources
GABRG2(3), SCN1A(8), SCN2A(2)
0.115 0.250 2.01e-7 1.34e-6 ✓ sig. Cluster 47 →
Congenital cystic kidney disease Joubert syndrome
3 genes
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2 of 3 corroborated by 2+ sources
TMEM231(5), KIF14(1), B9D1(5)
0.050 0.750 2.02e-7 1.34e-6 ✓ sig. Cluster 8 →
Potassium deficiency Ventricular dysfunction
4 genes
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4 of 4 corroborated by 2+ sources
INS(2), AGT(2), NPPB(2), ADRB2(2)
0.066 0.222 2.07e-7 1.37e-6 ✓ sig. —
Cyclocephaly Holoprosencephaly
3 genes
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3 of 3 corroborated by 2+ sources
FGF8(3), GAS1(5), ZIC2(6)
0.088 0.429 2.09e-7 1.39e-6 ✓ sig. —
Cerebral arteriovenous malformations Congenital arteriovenous malformation
3 genes
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CACNA1H(1), GLI2(1), ADGRV1(1)
0.103 0.333 2.11e-7 1.40e-6 ✓ sig. —
Ehlers-danlos syndrome Mitral valve prolapse
5 genes
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5 of 5 corroborated by 2+ sources
FBN1(2), COL5A1(8), PLOD1(5), FLNA(2), SLC39A13(5)
0.057 0.114 2.11e-7 1.40e-6 ✓ sig. Cluster 12 →
Carpal tunnel syndrome Osteochondrodysplasias
5 genes
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5 of 5 corroborated by 2+ sources
COL11A1(3), COL11A2(2), COMP(3), ADAMTSL2(3), COL10A1(2)
0.054 0.152 2.12e-7 1.41e-6 ✓ sig. Cluster 345 →
Autism, x-linked X-linked complex neurodevelopmental disorder
3 genes
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3 of 3 corroborated by 2+ sources
NLGN4X(6), PTCHD1(3), NLGN3(4)
0.077 0.500 2.14e-7 1.42e-6 ✓ sig. —
Angle closure glaucoma Avascular necrosis of bone
3 genes
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CAT(1), NOS3(1), GSTM1(1)
0.115 0.214 2.17e-7 1.43e-6 ✓ sig. Cluster 21 →
Angle closure glaucoma Osteonecrosis of medial femoral condyle
3 genes
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CAT(1), NOS3(1), GSTM1(1)
0.115 0.214 2.17e-7 1.43e-6 ✓ sig. Cluster 21 →
Epidermodysplasia verruciformis Immunodeficiency
4 genes
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4 of 4 corroborated by 2+ sources
RHOH(5), CORO1A(3), MST1(2), IL7(3)
0.028 0.571 2.18e-7 1.44e-6 ✓ sig. —
Congenital fiber type disproportion myopathy Nemaline myopathy
3 genes
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3 of 3 corroborated by 2+ sources
ACTA1(4), TPM2(5), TPM3(5)
0.111 0.273 2.20e-7 1.46e-6 ✓ sig. —
Esotropia Oral submucous fibrosis
3 genes
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2 of 3 corroborated by 2+ sources
TNF(2), PTGS2(2), CXCL8(1)
0.107 0.300 2.24e-7 1.48e-6 ✓ sig. Cluster 76 →
Berylliosis Oral submucous fibrosis
3 genes
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3 of 3 corroborated by 2+ sources
TNF(2), IL6(2), TGFB1(2)
0.107 0.300 2.24e-7 1.48e-6 ✓ sig. —
Oral submucous fibrosis Pleural diseases
3 genes
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3 of 3 corroborated by 2+ sources
IL6(2), TGFB1(2), IFNG(2)
0.107 0.300 2.24e-7 1.48e-6 ✓ sig. —
Dermatitis Sinusitis
4 genes
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3 of 4 corroborated by 2+ sources
HLA-DQA1(3), HLA-DRB1(1), HLA-B(3), IL13(2)
0.070 0.182 2.23e-7 1.48e-6 ✓ sig. —
Nasopharyngeal carcinoma Uterine neoplasms
4 genes
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ERCC1(1), KRAS(1), CCND1(1), BAP1(1)
0.070 0.182 2.23e-7 1.48e-6 ✓ sig. Cluster 3 →
Aortic stenosis Coronary syndrome
3 genes
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LPL(1), CELSR2(1), LPA(1)
0.048 0.750 2.24e-7 1.48e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.